View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_66 (Length: 336)
Name: NF0740_high_66
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 328
Target Start/End: Complemental strand, 42639718 - 42639420
Alignment:
| Q |
30 |
taaaatccactttttaacgtcaccatcttttcatcaaaatcaatagagaatgaaattcatttttaaccaagacatatatgctttgcgtaagcctattgta |
129 |
Q |
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| T |
42639718 |
taaaatccactttttaacgtcaccatcttttcatcaaaatcaatagagaatgaaattcatttttaaccaagacatatatgctttgcgtaagcctattgta |
42639619 |
T |
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| Q |
130 |
catatggttcgtatgtttgtgacaacaattgaaacaacgttgcatgtagctacaatgtttcgcttgtnnnnnnnnncttaactccaaatttgtcatgttt |
229 |
Q |
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| T |
42639618 |
catatggttcgtatgtttgtgacaacaattgaaacaacgttgcatgtagctacaatgtttcgcttgtaaaaaaaaacttaactccaaatttgtcatgttt |
42639519 |
T |
|
| Q |
230 |
ttaattgcatttactgcaaacttttccacattatggtggtcaaatctcaatctccaactccataaattgttgtttctttctcttttcattcttcatctc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42639518 |
ttaattgcatttactgcaaacttttccacattatggtggtcaaatctcaatctccaactccataaattgttgtttctctctcttttcattcttcatctc |
42639420 |
T |
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