View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_high_69 (Length: 334)
Name: NF0740_high_69
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_69 |
 | |
|
| [»] scaffold0179 (2 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0179 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 7717 - 7423
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
7717 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgcacatcttagggatcctgcaacatctttgatttgg |
7618 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7617 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
7518 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7517 |
tagaagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttatttatggcctatg |
7423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 12651 - 12532
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
12651 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgcacatcttagggatcctgcaacatctttgatttgg |
12552 |
T |
|
| Q |
130 |
catacccaggtgccgttgaa |
149 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12551 |
catacccaggtgccgttgaa |
12532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 26846056 - 26845766
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26846056 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgcacttcttagggatcctacaacatctttgatttgg |
26845957 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845956 |
catacccaggcgccgttgaaggtctcttt----gcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
26845861 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845860 |
cagaagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
26845766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 47537457 - 47537166
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| |||| || | | |||||||||||| | ||| |||||||||| |
|
|
| T |
47537457 |
gttgccagaccctgttgagggttacactgttcgtggttcatatcacttgctgactacaaaggacgtttctcttagggatcccgtagcatatttgatttgg |
47537358 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||| || |||||||||| ||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
47537357 |
cataaccagatgtcgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgata |
47537258 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||||||| || ||| |||||||||||| ||||| |||||| |
|
|
| T |
47537257 |
cagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcct |
47537166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 33121268 - 33121559
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| ||||||| ||||| |||||| || ||||||| | || | || ||||||||||||| || |||||||||| ||| |
|
|
| T |
33121268 |
gttgccagaccctttggtgggttactctgttcgtggttcatatcacatgctgacttctagcgacgttcctcttagggatcctgcatcatctttgatctgg |
33121367 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| ||||| |||||| |
|
|
| T |
33121368 |
catagtcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgatt |
33121467 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| ||| ||| |||| |||||||||||| ||||| ||||||||||||||| ||||||||||||| || || |||||||||||| |
|
|
| T |
33121468 |
cagaagcttctttgtgtgtctcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgcattctcatctttatggcct |
33121559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 99 - 321
Target Start/End: Complemental strand, 19222243 - 19222023
Alignment:
| Q |
99 |
tcttagggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaa |
198 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
19222243 |
tcttagggatcccgcaacatccttgatttggcataaccaggtgctgttgaaggtctctttatttgcttggaggtttcttcgt-gtagattgcctactaaa |
19222145 |
T |
|
| Q |
199 |
gataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtg |
298 |
Q |
| |
|
| ||||||||||| |||| ||||||||| |||| ||||| |||| |||||||| ||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
19222144 |
gttaatttggtccaaagaatggtgattgacacagaagcttctatgtgtgtttcagattgtgccatgagtgaaacggcgc-acatttgtttttatcttgtg |
19222046 |
T |
|
| Q |
299 |
atgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||||||||||| |
|
|
| T |
19222045 |
atgcattttcatctttatggcct |
19222023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 320
Target Start/End: Complemental strand, 50544411 - 50544120
Alignment:
| Q |
32 |
tgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggca |
131 |
Q |
| |
|
|||| ||||||| |||||||||| | |||||||||||||||| ||||||||| |||| || || |||| ||||| | || |||||||||||||||| |
|
|
| T |
50544411 |
tgccagaccctggtgagggttactcagttcgcggttcttatctattgttgactacaaaggacattcctcttgcggatcatgcagcatctttgatttggca |
50544312 |
T |
|
| Q |
132 |
tacccaggtgccgt---tgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgat |
228 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||| | || |
|
|
| T |
50544311 |
aaaccaggtgccgtcgttgaaggtctctatatttgcttggaggttgcttcgtgatagattgcctactaaagtgaatttggtccaaagaagggtgctagac |
50544212 |
T |
|
| Q |
229 |
tcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcc |
320 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| | | ||||||||||||||||| |||||||| |||||| | ||||| ||||||||||| |
|
|
| T |
50544211 |
acagatgcttctatgtgtgtttcagattgtggcttttgtgaaacggcgcaacatttatttttatcatgtgataccttttcatctttatggcc |
50544120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 48191970 - 48191842
Alignment:
| Q |
48 |
gggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccgttg |
147 |
Q |
| |
|
||||||| ||||||| ||||| |||||| || ||||||| | || | || ||||||||||||| || |||||||||| ||||||| |||||||||||| |
|
|
| T |
48191970 |
gggttactctgttcgtggttcatatcacatgctgacttctagagacgttcctcttagggatcctgcatcatctttgatctggcataatcaggtgccgttg |
48191871 |
T |
|
| Q |
148 |
aaggtctctttatttgcttggaggttgct |
176 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
48191870 |
aaggcttctttatttgcttggaggttgct |
48191842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 43121646 - 43121784
Alignment:
| Q |
59 |
ttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctcttt |
158 |
Q |
| |
|
|||| ||||| ||||| ||| ||||| |||| ||| ||| ||||| ||||||| ||||||| ||||||| ||||| ||||||||||||||||||||| | |
|
|
| T |
43121646 |
ttcgtggttcctatcatttgctgactacaaaggatactcctcttacggatcctgcaacatcgttgatttagcataatcaggtgccgttgaaggtctctat |
43121745 |
T |
|
| Q |
159 |
atttgcttggaggttgctacgtaatagattgcctactaa |
197 |
Q |
| |
|
||||| ||||||||||| ||| | ||||| || ||||| |
|
|
| T |
43121746 |
ctttgcctggaggttgcttcgtgacagattaccaactaa |
43121784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 23818737 - 23818599
Alignment:
| Q |
59 |
ttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctcttt |
158 |
Q |
| |
|
|||| ||||| ||||| ||| ||||| |||| ||| ||| |||| |||||| ||||||| ||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
23818737 |
ttcgtggttcctatcatttgctgactacaaaggatactcctcttgcagatcctgcaacatcgttgatttggcataatcaggtgccgttgaaagtctctat |
23818638 |
T |
|
| Q |
159 |
atttgcttggaggttgctacgtaatagattgcctactaa |
197 |
Q |
| |
|
||||| | ||||||||| ||| | |||||||| ||||| |
|
|
| T |
23818637 |
ctttgcctagaggttgcttcgtgacagattgccaactaa |
23818599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 25341529 - 25341584
Alignment:
| Q |
262 |
atgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatg |
317 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
25341529 |
atgagtgaaatggcgcaacatttgtttttatcttgtgatgcattttcacctttatg |
25341584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 8695099 - 8695133
Alignment:
| Q |
287 |
ttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8695099 |
ttttatcttgtgatgttttttcttctttatggcct |
8695133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 9046986 - 9047020
Alignment:
| Q |
287 |
ttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9046986 |
ttttatcttgtgatgttttttcttctttatggcct |
9047020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 20208670 - 20208964
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||| | | |
|
|
| T |
20208670 |
gttgccagaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgcacatcttaaggatcctgcaacatctttgatattg |
20208769 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20208770 |
catacccaggtgccgttgaaagtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
20208869 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20208870 |
cagaagcttcgttgtgtgtttcagattgtggcatgagagaaacggcgcaacatttatttttatcttgtgatgctttttcttctttatggcctatg |
20208964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 72 - 321
Target Start/End: Complemental strand, 4923381 - 4923132
Alignment:
| Q |
72 |
tcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggagg |
171 |
Q |
| |
|
|||||||||||||||||| || || | ||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4923381 |
tcacttgttgacttcaaacgacgcacatcttagggatcctgcagcatatttaatttggcatacccaggtgccgttgaaggtctctttatttgcttggagg |
4923282 |
T |
|
| Q |
172 |
ttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaa |
271 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||| |||| |
|
|
| T |
4923281 |
ttgctacgtgatagattgtctaataaagataatttggtccttagaagggtgattgattcagaagcttcgatgtgtgtttcagattgtggcatgagtgaaa |
4923182 |
T |
|
| Q |
272 |
cggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4923181 |
cggcgcaacatttgtttttatcttgtgatgcttttgcttctttatggcct |
4923132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 6049412 - 6049124
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||| ||||||||| ||||| ||| || | || |||||||||||| |||| || ||||||||| |
|
|
| T |
6049412 |
gttgccagaccctgttaagggttatactgttcgcggttcatatcacttgctgactataaaggacgttcctcttagggatcccgcaacttcgttgatttgg |
6049313 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
6049312 |
caccaccaggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgataggttgcctactaaagataatttggtccgaagaagggtgatcgaca |
6049213 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg |
318 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
6049212 |
cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcacaacatttgtttttatcttgtgatgcattttcacctttatgg |
6049124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 45 - 321
Target Start/End: Original strand, 7000731 - 7001007
Alignment:
| Q |
45 |
tgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccg |
144 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||| ||||||| | || |||||||||||| ||||||||||||||||||||| ||||||| || |
|
|
| T |
7000731 |
tgagggttacactgttcgcggttcatatcgcttgctgaccacaaatgacgttccccttagggatcctgcaacatctttgatttggcataaccaggtgtcg |
7000830 |
T |
|
| Q |
145 |
ttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatgt |
244 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| ||| |||||||||||||||| | ||||||||| | ||||||||| |||| ||||| ||||| ||| |
|
|
| T |
7000831 |
ttgaaggttttcttatttgcgtggaggttgcttcgtgatagattgcctactaaggttaatttggttcaaagaagggtgcttgactcagaagcttctctgt |
7000930 |
T |
|
| Q |
245 |
atgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||| || |||||||| | ||||| ||||||||||| |
|
|
| T |
7000931 |
gtgtttcagattgtggcatgagtgaaacggtacaacatttgtttctaacttgtgataccttttcacctttatggcct |
7001007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 4415651 - 4415935
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| ||||||| ||||| ||| || |||||||||| | || | || ||||||||||| | || |||||||||| ||| |
|
|
| T |
4415651 |
gttgccagaccctttggtgggttactctgttcgtggttcatattacatgttgacttctagagacgttcctcttagggatcatgcatcatctttgatctgg |
4415750 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | | ||| ||||| |||| | |
|
|
| T |
4415751 |
cataatcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttgattcaaagacgggtgcttgact |
4415850 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttcttt |
314 |
Q |
| |
|
|||| ||||| ||| |||||||| ||||||||| || ||||| |||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
4415851 |
cagaagcttctctgtgtgtttcagattgtggcattagtgaaacaacgcaacatttgtttctatcttgtgacgctttttcatcttt |
4415935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 40090376 - 40090238
Alignment:
| Q |
182 |
atagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaaca |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| | || ||||| |||| ||||| ||||||| | | ||| |||||||||| |
|
|
| T |
40090376 |
atagattgcctactaaagttaatttggtccaaagaagggtgattgacaccgaagcttctatgtgtgttttttattgtggcttttgtgaatcggcgcaaca |
40090277 |
T |
|
| Q |
282 |
tttgtttttatcttgtgatgctttttcttctttatggcc |
320 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
40090276 |
cttgtttttatcttgtgataccttttcatctttatggcc |
40090238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 321
Target Start/End: Original strand, 34874559 - 34874681
Alignment:
| Q |
195 |
taaagataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatct |
294 |
Q |
| |
|
||||| ||||||||| | |||||| || ||||| || | ||||| |||| ||||| || |||| || |||| ||||||||||||||||| | | || |
|
|
| T |
34874559 |
taaagttaatttggttcaaagaaggatgcttgatacaaaagcttctatgtgtgttttagattgtcgcttgagtgaaacggcgcaacatttct----aact |
34874654 |
T |
|
| Q |
295 |
tgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||||||| ||||| |||||||||||| |
|
|
| T |
34874655 |
tgtgatgcattttcatctttatggcct |
34874681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 23680351 - 23680060
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||| || ||||| |||| || | || ||||||||||||| ||||||||||||||||| |
|
|
| T |
23680351 |
gttgccagaccctgttgagggttacactgttcgcggttcatatcacctgctgactacaaaggacgttcctcttagggatcctgcaacatctttgatttgg |
23680252 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||| ||||||| || ||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
23680251 |
cataaccaggtgtcgttgaaagtttctttatttgcgtggaggttgcttcgtgatagtttgcctactaaagttaatttggttcaaagaagggtgcttgata |
23680152 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
23680151 |
cagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttaacttgtgatgctttttcatctttatggcct |
23680060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 108 - 324
Target Start/End: Complemental strand, 26031603 - 26031387
Alignment:
| Q |
108 |
tcctacaacatctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttg |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26031603 |
tcctgcaacatctttgatttggcatacccaggtgccattgaaagtctctttatttatttggaggttgctccgtaatagattgcctactaaagataatttg |
26031504 |
T |
|
| Q |
208 |
gtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgcttttt |
307 |
Q |
| |
|
| |||||||| ||||||||||||||| ||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26031503 |
gcccttagaaaggtgattgattcagaagcttcgatgtgtgtttctgattgtggcatgagagaaacggcgcaacatttgtttttatcctgtgatgtttttt |
26031404 |
T |
|
| Q |
308 |
cttctttatggcctatg |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26031403 |
cttctttatggcctatg |
26031387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 45255779 - 45256067
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| ||||||| || |||||||||||||||||||||||| ||||| |||| || | || || ||||||| | || | || ||||||||| |
|
|
| T |
45255779 |
gttgccagaccctattgagggctatactgttcgcggttcttatcacttgctgactacaaaggacgttcctcctagggattccgcagcttcgttgatttgg |
45255878 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| || | |
|
|
| T |
45255879 |
catcaccaggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgact |
45255978 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg |
318 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
45255979 |
cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg |
45256067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 17659020 - 17658729
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | ||||| |||| ||||||||| ||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
17659020 |
gttgcttgaccctattgagggttacactgtttgtggttcatatcgtttgttgactacaacggacattcttcttagggatcctgcaacatctttgatttgg |
17658921 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||| ||||||||||| || |||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
17658920 |
cataaccaggtgtcgttgaaggtttctttatttgcgtggaggttgcttcgagatagattgcctactaaagttaatttggttcaaagaagggtgcttgata |
17658821 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|| | ||||| |||| |||||||| ||||||||| || |||||||||||||||||||| || |||||||||| ||||| |||||||||||| |
|
|
| T |
17658820 |
caaaagcttccatgtgtgtttcagattgtggcataagtgaaacggcgcaacatttgttcctaacttgtgatgcgttttcatctttatggcct |
17658729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 36157260 - 36157179
Alignment:
| Q |
116 |
catctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaa |
197 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||| ||| | ||||| ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
36157260 |
catctttgatttggcataatcaggtgtcgttaaaggtttctatctttgcctggaggttgcttcataacagattgccaactaa |
36157179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 11060810 - 11061101
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| || | |||||||||||||||| || |||||||||||||| |
|
|
| T |
11060810 |
gttgcctgacccttttgagggttacactgttcgcggttcttatcgtatgttgactacaacggacgttcttcttagggatcctgcagcatctttgatttgg |
11060909 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
11060910 |
cataaccaggtgccgttgaaggtttctttatttgcatggaggttccttcgggatagattgcctactaaagttaatttggttcaaagaagggtgcttgata |
11061009 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
11061010 |
cagaagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttcctgacttgtgatgctttttcatctttatggcct |
11061101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 9199203 - 9199499
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||| | ||| ||||||| ||||||||||||| ||||| || ||| ||| | || | || ||||||||||| | || |||||||||||||| |
|
|
| T |
9199203 |
gttgccagaccatattgtgggttactctgttcgcggttcatatcatatgctgatttctagagacgttcctcttagggatcatgcatcatctttgatttgg |
9199302 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||| | ||||||| | ||| ||||| |||| | |
|
|
| T |
9199303 |
cataaccaggtgtcgttgaaggtttctttatttgcttggaggttgcttcgtgatggattgcctactaaagctgatttggttcgaagacgggtgcttgact |
9199402 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatgat |
326 |
Q |
| |
|
|||| |||||| ||| |||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
9199403 |
cagaagcttcattgtgtgtttcagattgtggcatgagtgaaatggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcctctgat |
9199499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 17079142 - 17079433
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||| ||||| |||||| || ||||| | | || | || |||||||||||| ||||||||||||| ||| |
|
|
| T |
17079142 |
gttgccagaccttgttgagggttatactgttcgtggttcatatcacatgctgactactagggacgttcctcttagggatcccgcaacatctttgatctgg |
17079241 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||| |||| |||||||| ||| |||||||||| ||||||| ||||||||| | ||| ||||| ||| |
|
|
| T |
17079242 |
cataaccaggtgccgttgaaggtttctctattttcttgaaggttgcttcgtgatagattgcccactaaagttaatttggttcaaagacgggtgcttgtca |
17079341 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||| ||| |||||| |||||||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
17079342 |
cagaagcttctatgtatgtttcaggttgtggcatgagtgaatcggcgcgacatttgtttctatcttgtgatgttttttcatctttatggcct |
17079433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 17873769 - 17874013
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||| | || |||||||||| ||| |
|
|
| T |
17873769 |
gttgccagatcctattcagggttacactgttcgcggttcttatcacttgttgacttcaaaggacgttcctcttagggatcttgcagcatctttgatctgg |
17873868 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| || ||||||| ||| ||||||||||||| |||| ||||||||| | |||| |||| ||||| |
|
|
| T |
17873869 |
cataaacaggtgccgttgaaggtatctttatttgctcggcggttgcttcgtgatagattgcctacaaaagttaatttggtacatagacgggtaattgaca |
17873968 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacgg |
274 |
Q |
| |
|
|||| ||| | || | |||| | | |||||||||||| ||||||| |
|
|
| T |
17873969 |
cagaagctgctatatgtgttacggattgtggcatgagtgaaacgg |
17874013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 18051400 - 18051578
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||| || ||||| | | || | | |||||||||||| | |||||||| ||| |
|
|
| T |
18051400 |
gttgtctgaccctgttgagggttacactgttcgtggttcttatcacatggtgactactagggacgtttctcttagggatcccgcggtctctttgatctgg |
18051499 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttgg |
208 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| | ||||||| |||||||| |
|
|
| T |
18051500 |
cataaccaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtccactaaagttaatttgg |
18051578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 53780234 - 53779943
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| || |||||||||||||||||||||| |||||||||||||||||||| || | || ||||||||||||| ||||||||||||| ||| |
|
|
| T |
53780234 |
gttgccagatcctattcagggttacactgttcgcggttcatatcacttgttgacttcaaaggacgttcctcttagggatcctgcaacatctttgatctgg |
53780135 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||||||||| |||| |||| ||||| |
|
|
| T |
53780134 |
cataaacaggtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaagttaatttggtccatagacgggtaattgaca |
53780035 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||| | |||| |||| | | |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
53780034 |
cagaagctgctatgtgtgttacggattgtggcatgagtgaaacggcgcaacatttgtttttatcatgtgatgttttttcttctttatggcct |
53779943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 20395785 - 20395494
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| || ||||| | | || | | |||||||||||| || |||||||| ||| |
|
|
| T |
20395785 |
gttgcctgaccctgttgagggttacactgttcgtggttcttatcacatgctgactactagggacgtttctcttagggatcccgcagtctctttgatctgg |
20395686 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
20395685 |
cataaccaggtgccgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgata |
20395586 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||||||| || ||| |||||||||||| ||||| |||||| |
|
|
| T |
20395585 |
cagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcct |
20395494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 42778427 - 42778136
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| ||| ||||||| ||||||||||||| ||||| || ||||||| | || | || || ||||||||| ||||||||||||||||| |
|
|
| T |
42778427 |
gttgccagatcctattgtgggttactctgttcgcggttcatatcatatgctgacttctagagacgttcctccgagggatcctgcaacatctttgatttgg |
42778328 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||| | || ||| |||||||||||||||||| ||||||||| | ||| ||||| |||| | |
|
|
| T |
42778327 |
cataaccaggtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgact |
42778228 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| |||||| ||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
42778227 |
cagaagcttcattgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct |
42778136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 10563260 - 10563551
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||||| || | |||||||| ||| |
|
|
| T |
10563260 |
gttgccagatcctattcagggttacactgttcgcggttcttatcacttgttgacttcaaaggacgttcctcttagggatcctgcagcttctttgatctgg |
10563359 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||| ||||||| ||| ||||||||||||| | || ||||||||||| |||| |||| ||||| |
|
|
| T |
10563360 |
cataaacaggtgacgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaatagttaatttggtccatagacgggtaattgaca |
10563459 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
| || || | |||| |||| | | |||||||||||| |||||| || | |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10563460 |
ctgaagcggctatgtgtgttacggattgtggcatgagtgaaacgacgtagcatttgtttttatcgtgtgatgttttttcttctttatggcct |
10563551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 30273763 - 30274054
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||| ||||| |||||| || ||||||| | || | || ||||||||||||| || |||||||||| ||| |
|
|
| T |
30273763 |
gttgccagacccttttgtgggttactctgttcgtggttcatatcacatgctgacttctagagacgttcctcttagggatcctgcatcatctttgatctgg |
30273862 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||| ||||| ||||||||| | ||| ||||| |||| | |
|
|
| T |
30273863 |
cataatcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtctattaaagctaatttggttcaaagacgggtgcttgact |
30273962 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||| ||||| ||| |||||||| |||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
30273963 |
tagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcct |
30274054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 53486904 - 53487195
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||| ||||| |||||| || ||||||| || | || |||||||||||| ||||||||||||||||| |
|
|
| T |
53486904 |
gttgccagaccctattgtgggttactctgttcgtggttcatatcacatgctgacttctcgagacgttcctcttagggatcccgcaacatctttgatttgg |
53487003 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||| ||||| |||| | |
|
|
| T |
53487004 |
cataaccaggtgtcgttgaaggtttctttatttgcttggaggttgcttcgagatagattgcctactaaagctaatttggttgaaagacgggtgcttgact |
53487103 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| ||| |||||| | |||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
53487104 |
cagaagcttctttgtgtgtttctgattgtggcatgtgtgaaacggcgcaacatttgtttctatcttgtgatgctttttcacctttatggcct |
53487195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 18106507 - 18106803
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| |||||| ||||| |||||| || |||| || | || | || ||||||||||||| || |||||||||| ||| |
|
|
| T |
18106507 |
gttgccagaccctttggtgggttactctgttcttggttcatatcacatgctgacctctagagacgttcctcttagggatcctgcatcatctttgatctgg |
18106606 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| ||||| |||||| |
|
|
| T |
18106607 |
catagttaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgatt |
18106706 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatgat |
326 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
18106707 |
cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcctctgat |
18106803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 34322270 - 34322554
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| ||||||| ||||| |||||| || ||||||| | || | || ||||||||||||| || |||||||||| ||| |
|
|
| T |
34322270 |
gttgccagaccctttggtgggttactctgttcgtggttcatatcacatgctgacttctagagacgttcctcttagggatcctgcatcatctttgatctgg |
34322369 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| ||||| ||| | |
|
|
| T |
34322370 |
cataatcaggtgtcgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgtct |
34322469 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttcttt |
314 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
34322470 |
cagaagcttctctgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatcttt |
34322554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 321
Target Start/End: Original strand, 29213001 - 29213223
Alignment:
| Q |
99 |
tcttagggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaa |
198 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||| ||| |
|
|
| T |
29213001 |
tcttagggatcctgcagcatctttgatctggcataaacaggtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaa |
29213100 |
T |
|
| Q |
199 |
gataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtg |
298 |
Q |
| |
|
| ||||||||||| |||| | || ||||| |||| ||| | |||| |||| | | || ||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
29213101 |
gttaatttggtccatagacgagtaattgacacagaagctgctatgtgtgttacggattctggcatgagtgaaacggcgcaacatttgtttttattgtgtg |
29213200 |
T |
|
| Q |
299 |
atgctttttcttctttatggcct |
321 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
29213201 |
atgttttttcttctttatggcct |
29213223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 450001 - 449946
Alignment:
| Q |
269 |
aaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
450001 |
aaacagcgcaacatttgtttctatcttgtgacgctttttcttctttatggcctatg |
449946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 26720843 - 26720673
Alignment:
| Q |
37 |
gaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcataccc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26720843 |
gaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgcacatcttagggatcctgcaacatctttgatttggcataccc |
26720744 |
T |
|
| Q |
137 |
aggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttg |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720743 |
aggtgccgttgaaagtctctttatttgcttgtaggttgctacgtaatagattgcctactaaagataatttg |
26720673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 41061231 - 41061389
Alignment:
| Q |
166 |
tggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatgtatgtttcagtttgtggcatga |
265 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
41061231 |
tggaggttgcttcgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagcttcgatgtgtgtttcagtttgtggcatga |
41061330 |
T |
|
| Q |
266 |
gagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41061331 |
gagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
41061389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 47106632 - 47106919
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||| ||||||||| ||||| |||| || | || ||||||||||| || | || ||||||||| |
|
|
| T |
47106632 |
gttgccagaccctgttgaggggtt-actgttcgcggttcatatcacttgctgactacaaaggacgttccacttagggatcccgcagcttcgttgatttgg |
47106730 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
47106731 |
caccaccaggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgaca |
47106830 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg |
318 |
Q |
| |
|
||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
47106831 |
tagaagcttctttgtgtgtttcaaattgtggcatgagtgaaacggcgcaacatttgattttatcttgtgatgcattttcacctttatgg |
47106919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 10711112 - 10711403
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |||| || | ||| | | || | || |||||||||||| || |||| | || ||| |
|
|
| T |
10711112 |
gttgccagaccctgttgagggttacactgttcgtggttcatatccaatgctaactactagggacgttcctcttagggatcccgcactatctataatctgg |
10711211 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||||||| |||| |||| | ||| ||||| |||| |
|
|
| T |
10711212 |
cataaccacgtgccgttgaaggtttctttattttcttagaggttgcttcgtgatagattgcctactaaagttaatatggttcaaagatgggtgcttgaca |
10711311 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
10711312 |
cagaagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatctttatggcct |
10711403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 321
Target Start/End: Original strand, 30110883 - 30111166
Alignment:
| Q |
37 |
gaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcataccc |
136 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||| |||||| || ||||| ||| |||| | ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
30110883 |
gacccttttgaggggtacacagttcggggttcatatcacatgctgactacaagggatgtttcacttagggatcctacaacttctttgatttggcataatc |
30110982 |
T |
|
| Q |
137 |
aggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgc |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | ||| ||||| |||| || || |
|
|
| T |
30110983 |
aggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagtcaatttggctcaaagacgggtgcttgacacaagagc |
30111082 |
T |
|
| Q |
237 |
ttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||| ||| |||||||| ||||||||| | |||| |||||||||||||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
30111083 |
ttctttgtgtgtttcagactgtggcatgtgtgaaaaggcgcaacatttgtttctatcttgtgatg-tttttcatctttatggcct |
30111166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 144 - 321
Target Start/End: Complemental strand, 17708071 - 17707894
Alignment:
| Q |
144 |
gttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatg |
243 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| ||||| |||| | ||| ||||| || |
|
|
| T |
17708071 |
gttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttg |
17707972 |
T |
|
| Q |
244 |
tatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
| |||||||| |||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
17707971 |
tgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcct |
17707894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 26720672 - 26720594
Alignment:
| Q |
246 |
tgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720672 |
tgtttcagattgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
26720594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 21335328 - 21335463
Alignment:
| Q |
37 |
gaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcataccc |
136 |
Q |
| |
|
|||||| |||| || ||| | ||||||||| |||||||| |||||||| |||| ||| || |||| |||||||||||||||||||||||| |||| | |
|
|
| T |
21335328 |
gacccttttgaagggtactcagttcgcggt-cttatcacctgttgactacaaaagatattcctcttgtggatcctacaacatctttgatttgacataatc |
21335426 |
T |
|
| Q |
137 |
aggtgccgttgaaggtctctttatttgcttggaggtt |
173 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |
|
|
| T |
21335427 |
aggtgccgttgaaggtctctatctttgcttggaggtt |
21335463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 28097998 - 28098079
Alignment:
| Q |
116 |
catctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaa |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| | ||||| | ||||||||| ||| | |||||||| ||||| |
|
|
| T |
28097998 |
catctttgatttggcataatcaggtgccgttgaaggtttctatctttgcctagaggttgcttcgtgacagattgccaactaa |
28098079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 7396898 - 7396955
Alignment:
| Q |
267 |
agaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||| ||||||||| || ||||||||| |
|
|
| T |
7396898 |
agaaacggcgcaacatttatttttagcttgctatgatttttcttcattgtggcctatg |
7396955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 7396747 - 7396807
Alignment:
| Q |
116 |
catctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgct |
176 |
Q |
| |
|
||||| |||||| ||||| ||||||| |||||||||||||| | |||| ||||| |||||| |
|
|
| T |
7396747 |
catctatgattttgcataaccaggtgtcgttgaaggtctctatttttgtttggatgttgct |
7396807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 7458622 - 7458916
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||| || | || ||| ||||||||| || | |||||||| ||| |
|
|
| T |
7458622 |
gttgccagatcctattcagggttacactgttcgcggttcttatcacttgttgacttcaaaggacgttcctctcagggatcctgcagcttctttgatctgg |
7458721 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| |||| |||| ||||| |
|
|
| T |
7458722 |
cataaacaggtgccgttgaaagtttctttatttgcttggcggttgcttcgtgatagattgcctactaaagtgaatttggtccatagacgggtaattgaca |
7458821 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatg |
324 |
Q |
| |
|
| || || | |||| |||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7458822 |
ctgaagcggctatgtgtgttacagattgtggcatgagcgaaacggcgcaacatttgtttttatcgtgtgatgttttttcttctttatggcctatg |
7458916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 320
Target Start/End: Complemental strand, 4077457 - 4077174
Alignment:
| Q |
37 |
gaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcataccc |
136 |
Q |
| |
|
||||||| |||||| || || ||||||||||||||||||||||||||| |||| || || | || ||||| | || ||||||| |||||||||| || |
|
|
| T |
4077457 |
gaccctgctgagggctatacagttcgcggttcttatcacttgttgactacaaaggacattcctattgtggatcatgcagcatctttaatttggcataacc |
4077358 |
T |
|
| Q |
137 |
aggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgc |
236 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||| |||||||| | || || |
|
|
| T |
4077357 |
aggtgccgttgaaggtttctatttttgcttggaggttgcttcgtgatagattgcctactaaagacaatttggtccaaagaaggatgattgataccgaagc |
4077258 |
T |
|
| Q |
237 |
ttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcc |
320 |
Q |
| |
|
||| |||| |||||||| ||||||| | | |||||||||| ||||| ||||||||||||||| | ||||| || |||||||| |
|
|
| T |
4077257 |
ttctatgtgtgtttcagattgtggcttttgtgaaacggcgcggcatttatttttatcttgtgataccttttcatcattatggcc |
4077174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 49 - 321
Target Start/End: Complemental strand, 34231869 - 34231597
Alignment:
| Q |
49 |
ggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttggcatacccaggtgccgttga |
148 |
Q |
| |
|
|||||| ||||||| ||||| |||||| || ||||||| | || | || ||||||||||| | | ||||| |||| ||||||| ||||||| |||||| |
|
|
| T |
34231869 |
ggttactctgttcgtggttcatatcacatgctgacttctagagacgttcctcttagggatcatgcgtcatctctgatatggcataaccaggtgtcgttga |
34231770 |
T |
|
| Q |
149 |
aggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagatgcttcaatgtatgt |
248 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||| ||||| |||||||||||| ||||||||| | ||| ||||| |||| | ||| ||||| ||| ||| |
|
|
| T |
34231769 |
aggtttctttatttgcttggaggctgcttcgtgatagactgcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttgtgtgt |
34231670 |
T |
|
| Q |
249 |
ttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
34231669 |
ttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacactttttcatctttatggcct |
34231597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 29113500 - 29113791
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| ||||||| ||||| ||||||||| ||||||| | | | || ||||||||||| | | | ||| |||| ||| |
|
|
| T |
29113500 |
gttgccagaccctttggtgggttactctgttcgtggttcatatcacttgctgacttctagacacgttcctcttagggatcatgcgtcttctctgatatgg |
29113599 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| | ||| |||| | |
|
|
| T |
29113600 |
cataaacaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgagtgcttgact |
29113699 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
| || ||||| ||| ||||| || |||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||| |
|
|
| T |
29113700 |
ccgaagcttctttgtgtgttttagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttttggcct |
29113791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 28060519 - 28060475
Alignment:
| Q |
277 |
caacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
28060519 |
caacatttgtttttatcttgcgatgctttttcatctttatggcct |
28060475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 1380271 - 1379980
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| || ||| ||| ||||||| ||||||||||||| ||||| || ||||||| | || | || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
1380271 |
gttgccagatcctattgtgggttactctgttcgcggttcatatcatatgctgacttctagagacgttcctctgagggatcctgcaacatctttgatttgg |
1380172 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||| | || ||| |||||||||||||||||| ||||||||| | ||| ||||| |||| | |
|
|
| T |
1380171 |
cataaccaggtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgact |
1380072 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|||| |||||| ||| |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
1380071 |
cagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct |
1379980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 2999699 - 2999995
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
|||||| |||||| | | ||||||| |||||| ||||| |||||| || |||| || | || | || ||||||||||||| || |||||||||| ||| |
|
|
| T |
2999699 |
gttgccagaccctttggtgggttactctgttcttggttcatatcacatgctgacctctagagacgttcctcttagggatcctgcatcatctttgatctgg |
2999798 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||| ||||| |||||| |
|
|
| T |
2999799 |
catagttaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgatt |
2999898 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcctatgat |
326 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
2999899 |
cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcctctgat |
2999995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 11027214 - 11027122
Alignment:
| Q |
105 |
ggatcctacaacatctttgatttggcatacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaa |
197 |
Q |
| |
|
||||||| || ||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||||| | | |||| ||||| ||||| |
|
|
| T |
11027214 |
ggatcctgcatcatctttgatttgacataatcaggtgccgttgaaggtttctttctttgcgtggaggttgcttcatgataggttgccaactaa |
11027122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 182318 - 182027
Alignment:
| Q |
30 |
gttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttcaaatgatgctcttcttagggatcctacaacatctttgatttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| || ||||| | | || | | |||||||||||| || |||||||| ||| |
|
|
| T |
182318 |
gttgcctgaccctgttgagggttacactgttcgtggttcttatcacatgctgactactagggacgtttctcttagggatcccgcagtctctttgatctgg |
182219 |
T |
|
| Q |
130 |
catacccaggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatt |
229 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||| | ||| ||||| |||| |
|
|
| T |
182218 |
cataaccaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgaca |
182119 |
T |
|
| Q |
230 |
cagatgcttcaatgtatgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct |
321 |
Q |
| |
|
|| ||||| |||| |||| ||| ||||||||||| ||||| ||||||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
182118 |
ttgaagcttctatgtgtgttacagattgtggcatgaatgaaacagcgcaacatttgtttctttcttgtgatgttttttcttctttatggcct |
182027 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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