View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_7 (Length: 551)
Name: NF0740_high_7
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 29 - 547
Target Start/End: Complemental strand, 29235853 - 29235339
Alignment:
| Q |
29 |
acatcttcccaaggtgccttaggaattggaagtggcgtatataactcttgaagtgcttttactgttttttattttgatttaagagcaataaacttgcttt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235853 |
acatcttcccaaggtgccttaggaattggaagtggcgtatataactcttgaagtgcttttactgttttttattttgatttaagagcaataaacttgcttt |
29235754 |
T |
|
| Q |
129 |
ttctggagaaaccattctcttgacttttcataaagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggataggagtcacattggg |
228 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29235753 |
ttctagagaaaccattctcttgactttttataaagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggatagtagtcacattggg |
29235654 |
T |
|
| Q |
229 |
tatccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaac |
328 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29235653 |
tttccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagaccatagacaagtgtttgaaac |
29235554 |
T |
|
| Q |
329 |
catgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttc |
428 |
Q |
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| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235553 |
c----aaacatggtttcaatattgtcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttc |
29235458 |
T |
|
| Q |
429 |
cctcatatgtagagcaaattaaatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgt |
528 |
Q |
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|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235457 |
cctcatatgtagagcatagtagatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgt |
29235358 |
T |
|
| Q |
529 |
aaggctttctctgctcctc |
547 |
Q |
| |
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|||||||| | |||||||| |
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| T |
29235357 |
aaggctttttatgctcctc |
29235339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 161 - 547
Target Start/End: Complemental strand, 29349020 - 29348638
Alignment:
| Q |
161 |
aagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggataggagtcacattgggtatccatctgacaaaaagattcctcaaaatta |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29349020 |
aagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggatagtagtcacattgggtttccatctgacaaaaagattcctcaaaatta |
29348921 |
T |
|
| Q |
261 |
tatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatc |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
29348920 |
tatttacatgatttgctgcaatgtagcttttgctttgcacttgcagaccatagacaagtgtttgaaacca----aacatggtttcaatattgtcatcatc |
29348825 |
T |
|
| Q |
361 |
cttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctcatatgtagagcaaattaaatttgtaaat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
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|
| T |
29348824 |
cttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctcatatgtagagcatagtagatttgtaaat |
29348725 |
T |
|
| Q |
461 |
tgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgtaaggctttctctgctcctc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
29348724 |
tgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgtaaggctttttatgctcctc |
29348638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 144 - 433
Target Start/End: Complemental strand, 16801356 - 16801067
Alignment:
| Q |
144 |
tctcttgacttttcataaagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggataggagtcacattgggtatccatctgacaaa |
243 |
Q |
| |
|
|||| |||||||||| | || |||||| ||||||| |||||||| |||||||||||||||||||| |||| ||| | || ||| | ||||||| | |
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|
| T |
16801356 |
tctcatgacttttcaaatagtttatcagggtttccattcccagattattcaagcctttagcttcctgaatagcagttatcttcggtcttcatctgatagg |
16801257 |
T |
|
| Q |
244 |
aagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaaccatgaaaacatggtt |
343 |
Q |
| |
|
|||| ||||||||| | ||||||||||||| | || ||||||||||| || ||||||||||| | |||||||||||||||||| |||||||||| || |
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| T |
16801256 |
aagacacctcaaaatcttctttacatgatttgattcagtgtagcttttgattagcacttgcagacaagagacaagtgtttgaaaccttgaaaacatgatt |
16801157 |
T |
|
| Q |
344 |
tcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctca |
433 |
Q |
| |
|
||||||| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| ||||| | |||| ||||||||||||| |
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|
| T |
16801156 |
tcaatatcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttccttccatcacttattgatttccctca |
16801067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 144 - 433
Target Start/End: Complemental strand, 16840642 - 16840353
Alignment:
| Q |
144 |
tctcttgacttttcataaagcttatcaaagtttccagacccagattgttcaagcctttagcttcctggataggagtcacattgggtatccatctgacaaa |
243 |
Q |
| |
|
|||| |||||||||| | || |||||| ||||||| |||||||| |||||||||||||||||||| |||| ||| | || ||| | ||||||| | |
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| T |
16840642 |
tctcatgacttttcaaatagtttatcagggtttccattcccagattattcaagcctttagcttcctgaatagcagttatcttcggtcttcatctgatagg |
16840543 |
T |
|
| Q |
244 |
aagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaaccatgaaaacatggtt |
343 |
Q |
| |
|
|||| ||||||||| | ||||||||||||| | || ||||||||||| || ||||||||||| | |||||||||||||||||| |||||||||| || |
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| T |
16840542 |
aagacacctcaaaatcttctttacatgatttgattcagtgtagcttttgattagcacttgcagacaagagacaagtgtttgaaaccttgaaaacatgatt |
16840443 |
T |
|
| Q |
344 |
tcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctca |
433 |
Q |
| |
|
||||||| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| ||||| | |||| ||||||||||||| |
|
|
| T |
16840442 |
tcaatatcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttccttccatcacttattgatttccctca |
16840353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 16801051 - 16800999
Alignment:
| Q |
474 |
tcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttctt |
526 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
16801051 |
tcaacgaagggaagagtattcaccatgatactgcaagctttatgatgtttctt |
16800999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 312 - 444
Target Start/End: Complemental strand, 18085855 - 18085723
Alignment:
| Q |
312 |
agacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
411 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||| |||| |||| |
|
|
| T |
18085855 |
agacaagtgtttgaaaccttgaaaccatagtttcaatatcttcatcatccttcattttgaatagtttgtattgttggactagaagattttccttgacttc |
18085756 |
T |
|
| Q |
412 |
ctttacttgttgatttccctcatatgtagagca |
444 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |
|
|
| T |
18085755 |
attcacttgttgatttccctcatatgtggagca |
18085723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 546
Target Start/End: Complemental strand, 18085666 - 18085598
Alignment:
| Q |
478 |
ggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgtaaggctttctctgctcct |
546 |
Q |
| |
|
||||| ||||| |||||||||||||||| | ||||||||||||||| ||| ||||| ||||||||| |
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|
| T |
18085666 |
ggaagggaagattattcaccatgatactacaaactttatgatgtttcttctaaagctttttctgctcct |
18085598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 11012641 - 11012542
Alignment:
| Q |
336 |
acatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctcata |
435 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||| | | ||| |||||||| | |||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11012641 |
acatggcttcaatatcgccatcatccttcattatgaacaactcatattgttggactataagatttgtcttatcttccttcacttgttgatttccctcata |
11012542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 8534523 - 8534485
Alignment:
| Q |
34 |
ttcccaaggtgccttaggaattggaagtggcgtatataa |
72 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
8534523 |
ttcctaaggtgccttaggaactggaagtggcgtatataa |
8534485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 2406262 - 2406306
Alignment:
| Q |
29 |
acatcttcccaaggtgccttaggaattggaagtggcgtatataac |
73 |
Q |
| |
|
||||||| ||||||||||||| | | ||||||||||||||||||| |
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|
| T |
2406262 |
acatcttgccaaggtgccttaaggactggaagtggcgtatataac |
2406306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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