View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_70 (Length: 333)
Name: NF0740_high_70
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 76 - 261
Target Start/End: Complemental strand, 11397212 - 11397027
Alignment:
| Q |
76 |
tcttcctcttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaagaaatttt |
175 |
Q |
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| T |
11397212 |
tcttcctcttctcgtctagtttcctacaatttaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaacaaatttg |
11397113 |
T |
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| Q |
176 |
gaagataaaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaaggtaggaaacaaatag |
261 |
Q |
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| T |
11397112 |
gaagatgaaataggaccacaatactgatcaattagtaatcaaattccatccaacacaacaattggtcaaaggtaggaaacaaatag |
11397027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 10732788 - 10732957
Alignment:
| Q |
76 |
tcttcctcttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaagaaatttt |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
10732788 |
tcttcctcttctcgtctagtttcctacaattcaataaccccagatgata--acaagtaagtgccaagaggttgtttttaagacaatatttaacaaatttt |
10732885 |
T |
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| Q |
176 |
gaagataaaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaagg |
247 |
Q |
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| T |
10732886 |
gaacatgaaataggaccacaatattgatcaatttgtaatcaaattccatccaacacaacagttggttaaagg |
10732957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 10733859 - 10733920
Alignment:
| Q |
259 |
tagcatgcattgtccacaaggttgtctctaggactttctatcaatcaacaatgttttcttct |
320 |
Q |
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| T |
10733859 |
tagcaggcattgtccacaaggttgtctcgagaagtttctatcaatcaacgttgttttcttct |
10733920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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