View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_71 (Length: 331)
Name: NF0740_high_71
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 18783391 - 18783106
Alignment:
| Q |
1 |
ataccataatactcttccataaaggatcagaggatatctttgaagaaatgtaactcttaagagcctttgaaatttggtgcatgaaatctgtccctggtgt |
100 |
Q |
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| T |
18783391 |
ataccataatacccttccataaaggatcagaggatatctttgaagaaatgtaactcttaagagcgtttgaaatttggtgcatgaaatctgtccctggtgt |
18783292 |
T |
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| Q |
101 |
tattatgttagaatctgacacttcacattcttgtttaggaagaacttgtttgccttccatttcaaattccttccttagtctctcttcctcgacttcctat |
200 |
Q |
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| T |
18783291 |
tattatgttagaatctgacacttcacattcttgtttaggaagaacttgtttgccttccatttcaaattccttccttagtctctcttcctcgacttcctat |
18783192 |
T |
|
| Q |
201 |
aaatacaattaattcaaaaaatcattaagccttgatcattctactgttttataaattcaattttttatttgtttcaaatagatgaaatacttacacgcat |
300 |
Q |
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| T |
18783191 |
aaatacaa----------------ttaagccttgatcattctactgttttataaattcaatttgttatttgtttcaaatagatgaaatacttacgcgcat |
18783108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 22872715 - 22872553
Alignment:
| Q |
33 |
gatatctttgaagaaatgtaactcttaagagcctttgaaatttggtgcatgaaatctgtccctggtgttattatgttagaatctgacacttcacattctt |
132 |
Q |
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|||||| ||||||| || ||||| |||||| ||| ||| |||||||||||| |||||||| | ||||||||| ||||| |||||||||| |||||||| |
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| T |
22872715 |
gatatccttgaagagatataacttttaagattcttgaaaagttggtgcatgaattctgtcccagttgttattatattagattctgacacttgacattctt |
22872616 |
T |
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| Q |
133 |
gtttaggaagaacttgtttgccttccatttcaaattccttccttagtctctcttcctcgacttc |
196 |
Q |
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| T |
22872615 |
gtttaggaagaatttgtttg-cttccatttcaaattccttcctcagtctctcctcctcggcttc |
22872553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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