View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_77 (Length: 314)
Name: NF0740_high_77
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 54012459 - 54012743
Alignment:
| Q |
1 |
tcgcggtacaacccaggtttggtggagtctacctcggaggtaatagaaactaagtaaaaatgttttggaccaaagccacattgccatcacaactaaaaag |
100 |
Q |
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| T |
54012459 |
tcgcggtacaacccaggtttggtggagtctacctcggaggtaatagaaactaagtaaaaatgttttggaccaaagccacattgccatcacaactaaaaag |
54012558 |
T |
|
| Q |
101 |
gttaccggcaaacatgggatgaagaagagtcttgtagtgtatgcaaatgaagaagcggagcacagaacaaacggaacatgcatgcaggatgagatatcaa |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
54012559 |
gttactggcaaacatgggatgaagaagagtcttgtagtgtatgcaaatgaagaagcggatcgcagaacaaacggaacatgcatgcaggatgagatatcaa |
54012658 |
T |
|
| Q |
201 |
ccatatgagccaagaaaacaaaatgtggtaccgtagtgccatttcctgcattgataaagattcaatacaactttattatcataat |
285 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012659 |
ccatatgagccaagaaaacaaagcgtggtaccgtagcgccatttcctgcattgataaagattcaatacaactttattatcataat |
54012743 |
T |
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