View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_81 (Length: 303)
Name: NF0740_high_81
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_81 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 39951296 - 39951012
Alignment:
| Q |
2 |
cagagaagaaatacgcatcaagtcttactataaaagccacatctaaaaacaaaagctatgaacaaaatcaataatcaggttggacttaggagtgagttta |
101 |
Q |
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| T |
39951296 |
cagataagaaatgcgcatcaagtcttactgtaaaagccacagctaaaaacaaaagctatgaacaaaatcaataatcaggttggagttaggagtgagttta |
39951197 |
T |
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| Q |
102 |
ccctgatttgtcatataaatagctacgttgaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaactttttcat |
201 |
Q |
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| T |
39951196 |
ccctgatttgtcatataaacagcaacgttaaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaac-ttttcat |
39951098 |
T |
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| Q |
202 |
ttcagtaaaagcggacataaagggattaaaaatctgttagtgcatgttcatgactaattcacagacctggcgctcagcaagctctc |
287 |
Q |
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| T |
39951097 |
ttcagtaaaagctaacataaagggattaaaaatctgttagtgcatgttcatgactaattcacagacctggcactcagcaagctctc |
39951012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 303
Target Start/End: Complemental strand, 46402643 - 46402370
Alignment:
| Q |
31 |
ataaaagccacatctaaaaacaaaagctatgaacaaaatcaataatcaggttggacttaggagtgagtttaccctgatttgtcatataaatagctacgtt |
130 |
Q |
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|||||||||||| || ||||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| || || |
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| T |
46402643 |
ataaaagccacagcttaaaactaaagctgtgaacaaaaacaataatcaggttggacttgggagtgaatttaccctgatttgtcatataaacagcaacatt |
46402544 |
T |
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| Q |
131 |
gaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaactttttcatttcagtaaaagcggaca-taaagggatta |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
46402543 |
gaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaaggaactttttcatttcagtaaaagctgacacaaaagggatta |
46402444 |
T |
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| Q |
230 |
aaaatctgttagtgcatgttcatgactaattcacagacctggcgctcagcaagctctcctcttcctgtgaagtc |
303 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
46402443 |
aaaatctgttagtgcatgttcatgacagattcacggacctggcgctcagcaagctctcctcttccagtgaagtc |
46402370 |
T |
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