View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_82 (Length: 303)
Name: NF0740_high_82
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_82 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 41 - 283
Target Start/End: Original strand, 2244451 - 2244693
Alignment:
| Q |
41 |
ttttgaaattgagtaatttcaaaataaggagtgctagaaatactatcttctcaatactttctcaaaaatacaaattccttaatgtgtagtacattgcaat |
140 |
Q |
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| T |
2244451 |
ttttaaaattgagtaatttcaaaatgaggagtgctagaaatactatcttctcaatactttctcaaaaatacaaattccttaatgtgtagtacaatgcaat |
2244550 |
T |
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| Q |
141 |
tgcaatttcgtcaaaggtagatgtcatgctttatataggtgactccatggatcaatccatgtcatcataaggacaaaacaagaatataaaaaagatgttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244551 |
tgcaatttcgtcaaaggtagatgtcatgctttatataggtgactccatggatcaatccatgtcatcataaggacaaaacaagaatataaaaaagatgttt |
2244650 |
T |
|
| Q |
241 |
ctacttcataaatgagaatcaaatttatcaaggtcatgttcat |
283 |
Q |
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| T |
2244651 |
ctacttcataaatgagaatcaaatttatcaaggtcatgttcat |
2244693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 2126250 - 2126120
Alignment:
| Q |
152 |
caaaggtagatgtcatgctttatataggtgactccatggatcaatccatgtcatcataaggacaaaacaagaatataaaaaagatgtttctactt--cat |
249 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
2126250 |
caaaggtagatgtcataatttatataggtgaccccatggatcaatccatgccatcataaggacaaaacaagaatataaaaaagatgttcctacttcccag |
2126151 |
T |
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| Q |
250 |
aaatgagaatcaaatttatcaaggtcatgtt |
280 |
Q |
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| T |
2126150 |
aaatgaaaatcaaatttatcaatgtcatgtt |
2126120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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