View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_83 (Length: 301)
Name: NF0740_high_83
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_83 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36000456 - 36000224
Alignment:
| Q |
1 |
tatttctcttgtttctcaagccgaacgtcaaggcagcatggtaacattcatttatcaaaatcccttgttgcagtggatcattagtaatataaagttgcac |
100 |
Q |
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| T |
36000456 |
tatttctcttgtttctcaagccgaacgtcaaggcagcatggtaacattcatttatcaatatcccttgttgcagtggatcattagtaatataaagttgcac |
36000357 |
T |
|
| Q |
101 |
gcttgtagtaaattcatcatttcaatgtgaaagtgcaacggtaaaactgttaagagactttctcattgtagaaatcttcctaattttattcagttctttt |
200 |
Q |
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| T |
36000356 |
gcttgtagtaaattcatcatttcaatgtgaaagtgcaatggtaaaactgttaagagactttctcattgtagaaatcttcctaattttattcagttctttt |
36000257 |
T |
|
| Q |
201 |
gtgtcttgcttttgttggtattaatcaacgatg |
233 |
Q |
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| T |
36000256 |
gtgtcttgcttttgttggtattaatcaacgatg |
36000224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 36021544 - 36021412
Alignment:
| Q |
80 |
attagtaatataaagttgcacgcttgtagtaaattcatcatttcaatgtgaaagtgcaacggtaaaactgttaagagactttctcattgtagaaatcttc |
179 |
Q |
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| T |
36021544 |
attagtaacataaagttgtatgtttataataaattcatcctttcaatgtgaaagtacatcgataatattgttac-agactttaccattatagaaatcttc |
36021446 |
T |
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| Q |
180 |
ctaattttattcagttcttttgtgtcttgctttt |
213 |
Q |
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| T |
36021445 |
ctaattttactctcttcttttgtgttctgctttt |
36021412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 16118897 - 16118835
Alignment:
| Q |
166 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttggtattaatcaa |
228 |
Q |
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| T |
16118897 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaa |
16118835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 16340764 - 16340826
Alignment:
| Q |
166 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttggtattaatcaa |
228 |
Q |
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| T |
16340764 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaa |
16340826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 12898867 - 12898919
Alignment:
| Q |
166 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
12898867 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgattttattgg |
12898919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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