View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_9 (Length: 509)

Name: NF0740_high_9
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_9
NF0740_high_9
[»] chr1 (8 HSPs)
chr1 (9-498)||(51455353-51455841)
chr1 (380-494)||(30206808-30206922)
chr1 (380-491)||(51480424-51480535)
chr1 (410-494)||(51497310-51497394)
chr1 (108-197)||(51479949-51480038)
chr1 (92-199)||(30207301-30207408)
chr1 (114-198)||(51496994-51497078)
chr1 (223-341)||(51480269-51480387)
[»] chr5 (4 HSPs)
chr5 (9-498)||(43160278-43160774)
chr5 (415-498)||(27396465-27396548)
chr5 (412-491)||(20868672-20868751)
chr5 (98-187)||(27395958-27396047)
[»] scaffold0020 (1 HSPs)
scaffold0020 (413-491)||(137353-137431)
[»] chr6 (2 HSPs)
chr6 (410-491)||(18085553-18085634)
chr6 (108-191)||(18079591-18079673)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 51455353 - 51455841
Alignment:
Q  9 tttttctttattctatatttgaaatctatccatttggtttactatgggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagttctctga 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51455353 tttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagttctctaa 51455452  T
Q  109 gtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcctgtatag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455453 gtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcctgtatag 51455552  T
Q  209 tcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggc 308  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455553 tcggagaaaatttgtagttttatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggc 51455652  T
Q  309 ggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatagctgttgactt 408  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||    
T  51455653 ggattattctaaagatgagcgtgtgttctggtaaagactgatttggtatattaatcaatgc-tttttttacttattctaatgctatatagttgttgactt 51455751  T
Q  409 cacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455752 cacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 51455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 380 - 494
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
Q  380 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 479  Q
    |||| ||||| |||||||| |  |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30206922 ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt 30206823  T
Q  480 tgacctttgtctcct 494  Q
    |||| ||||||||||    
T  30206822 tgacatttgtctcct 30206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 491
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
Q  380 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 479  Q
    ||||||| || |||||| |||  ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51480424 ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt 51480523  T
Q  480 tgacctttgtct 491  Q
    | || |||||||    
T  51480524 taacatttgtct 51480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
Q  410 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct 494  Q
    ||||||| |||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  51497310 acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct 51497394  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 51479949 - 51480038
Alignment:
Q  108 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggta 197  Q
    ||||| || |||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | |||||| ||||||| |||||    
T  51479949 agtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggta 51480038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 30207408 - 30207301
Alignment:
Q  92 gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 191  Q
    ||||||||| ||||  ||||| || |||||  |||||||||  |||||||||  ||||||||||||||||||   |||||||| | |||||| |||||||    
T  30207408 gaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagac 30207309  T
Q  192 gaggtatt 199  Q
     |||||||    
T  30207308 aaggtatt 30207301  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 51496994 - 51497078
Alignment:
Q  114 tgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtat 198  Q
    ||||||||| |||| ||||| ||||||| || ||||||||||| ||||||  ||||||||| | |||||| |||| || ||||||    
T  51496994 tgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtat 51497078  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 51480269 - 51480387
Alignment:
Q  223 tagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaag 322  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||| ||||||||||||  || ||||||||  |||||   || |||||  |||||     
T  51480269 tagtttcatatattttccaatttataatttgcttttgggacgaacattgcagggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaa 51480368  T
Q  323 atgagcgtgtgttctggta 341  Q
    || ||||||||| ||||||    
T  51480369 ataagcgtgtgtactggta 51480387  T

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Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 43160278 - 43160774
Alignment:
Q  9 tttttctttattctatatttgaaatctatccatttggtttactatgggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagttctctga 108  Q
    ||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |||||  ||||||| || | | ||||| |||||||||||  |    
T  43160278 tttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggtcgaaaccaacagcaatgaggaagttgagttctcgaa 43160377  T
Q  109 gtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcctgtatag 208  Q
    | || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |||||    
T  43160378 gaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatgatttagaaggaaagagaagccaagatacaaggtattcctttatag 43160477  T
Q  209 tcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagg----gctctcactctcaaagctaaatataaaac 304  Q
    || ||||  |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  43160478 tcagagatcatttttagttttatatatttttcattttataatttgattttgggatgtgaattacaggcctctctctcactctcaatgctaaatataaaac 43160577  T
Q  305 cggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatag-----c 399  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||| ||||||||| |||||          
T  43160578 cggcggattattctaaagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg-ttttctttactta-tctaatgctttatagtgacaa 43160675  T
Q  400 tgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 498  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  43160676 tgttggcttcacactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaacctttgtctcctctgt 43160774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
Q  415 ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 498  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||  || |||| || |||||||||||||||||||||    
T  27396465 ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt 27396548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 491
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
Q  412 actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 491  Q
    |||||||||||||| |||||| | |  || ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  20868751 actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct 20868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 27395958 - 27396047
Alignment:
Q  98 gagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaag 187  Q
    ||||||||  ||||| |||| ||||  |||||||||||||||| ||| |||||| |||||||||||   |||||||| | ||||||||||    
T  27395958 gagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaag 27396047  T

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Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 491
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
Q  413 ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 491  Q
    ||||||||||||| |||||| |||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  137431 ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct 137353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
Q  410 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 491  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  | ||||||||||| || |||||||    
T  18085553 acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct 18085634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 18079591 - 18079673
Alignment:
Q  108 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 191  Q
    ||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | || ||| |||||||    
T  18079591 agtatatgctgaaag-acttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagac 18079673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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