View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_105 (Length: 308)
Name: NF0740_low_105
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 33388283 - 33388090
Alignment:
| Q |
12 |
aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattggaccctcagatgtcaaagat |
111 |
Q |
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| T |
33388283 |
aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattggaccctcagatgtcaaagat |
33388184 |
T |
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| Q |
112 |
gcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatggtatcggtacccaattgctttattcggcctagggat |
205 |
Q |
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| T |
33388183 |
gcttattgttagtccagagttcaactgttcaaacgagattctttcaatttctgcgatggtagcggtacccaattgctttattcggcctagggat |
33388090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 20816821 - 20817009
Alignment:
| Q |
12 |
aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattggaccctcagatgtcaaagat |
111 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20816821 |
aagtgttgaattacttgggtgcaatggatgatgaaggtaacttaacaaagttgggtaagattatgagtgagtttccgttggaccctcagatgtcaaagat |
20816920 |
T |
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| Q |
112 |
gcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatggtatcggtacccaattgctttattcggccta |
200 |
Q |
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| T |
20816921 |
gcttgttgttagccctgagttcaactgttcaaatgagattctgtcaatttctgcgatgctgtcagtacccaattgctttatccggccta |
20817009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 38779324 - 38779167
Alignment:
| Q |
12 |
aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattggaccctcagatgtcaaagat |
111 |
Q |
| |
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|||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779324 |
aagtgttgaattacttgggtgcactggatgatgaaggtaacttaacaaagcttggtgagattatgagtgagtttccattggaccctcagatgtcaaagat |
38779225 |
T |
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| Q |
112 |
gcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatg |
169 |
Q |
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|||| |||||||||| |||||||||||||| || |||||||||||||| ||||||||| |
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| T |
38779224 |
gcttgttgttagtcctgagttcaactgttcgaatgagattctttcaatttctgcgatg |
38779167 |
T |
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