View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_108 (Length: 305)
Name: NF0740_low_108
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_108 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 27225178 - 27225416
Alignment:
| Q |
8 |
cgaagaatatctctcagtaatgcacaaactccactattcagtaaatagaagtactaactta----ttaaataaaatataaccataaaattatttaaaata |
103 |
Q |
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| T |
27225178 |
cgaaaaatatctctcagtaatgcacaaactcccctattcagtaaatagaagtactaacttaattattaaataaaatataaccataaaattatttaaaata |
27225277 |
T |
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| Q |
104 |
taagtctatcaaactttccctttcttgaacctcaagcaattgcttaggtagtaagaatcaggaggtcaaaaccaagggatcaccaatttcattccaactt |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27225278 |
taagtctatcaaactttccctttcttgaaccttaagcaattgcttaggtagtaagaattagggggtcaaaaccaagggatcaccaatttcattccaactt |
27225377 |
T |
|
| Q |
204 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27225378 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
27225416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 27225591 - 27225620
Alignment:
| Q |
244 |
ggagcaaagccatgaacgattccctcttct |
273 |
Q |
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| T |
27225591 |
ggagcaaagccatgaacgattccctcttct |
27225620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 259306 - 259544
Alignment:
| Q |
8 |
cgaagaatatctctcagtaatgcacaaactccactattcagtaaatagaagtactaactta----ttaaataaaatataaccataaaattatttaaaata |
103 |
Q |
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|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
259306 |
cgaaaaatatctctcagtaatgcacaaactcccctattcagtaaatagaagtactaacttaattattaaataaaatataaccataaaattatttaaaata |
259405 |
T |
|
| Q |
104 |
taagtctatcaaactttccctttcttgaacctcaagcaattgcttaggtagtaagaatcaggaggtcaaaaccaagggatcaccaatttcattccaactt |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
259406 |
taagtctatcaaactttccctttcttgaaccttaagcaattgcttaggtagtaagaattagggggtcaaaaccaagggatcaccaatttcattccaactt |
259505 |
T |
|
| Q |
204 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
259506 |
agagtcttaagctcctctaggttacaaagtttcatcaat |
259544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 259719 - 259748
Alignment:
| Q |
244 |
ggagcaaagccatgaacgattccctcttct |
273 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
259719 |
ggagcaaagccatgaacgattccctcttct |
259748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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