View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_112 (Length: 300)
Name: NF0740_low_112
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_112 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 6457987 - 6457727
Alignment:
| Q |
30 |
ttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagct |
129 |
Q |
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| T |
6457987 |
ttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagct |
6457888 |
T |
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| Q |
130 |
tcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6457887 |
tcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcac |
6457788 |
T |
|
| Q |
230 |
tgacggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtaccttgttcatc |
290 |
Q |
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| T |
6457787 |
tgacggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtaccttgttcatc |
6457727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 6451894 - 6451636
Alignment:
| Q |
33 |
cttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcg |
132 |
Q |
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| T |
6451894 |
cttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcg |
6451795 |
T |
|
| Q |
133 |
atgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactga |
232 |
Q |
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| T |
6451794 |
atgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacaga |
6451695 |
T |
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| Q |
233 |
cggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtaccttgttcatct |
291 |
Q |
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||||||||||| ||| ||||||||||| ||||| ||||| | |||||| || ||||||| |
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| T |
6451694 |
cggtgaacaagcccttaagtttccaccacctcaagtaattagaggtactttattcatct |
6451636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 6264260 - 6264157
Alignment:
| Q |
153 |
gaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagt |
252 |
Q |
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| T |
6264260 |
gaaggaggaattaagctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagt |
6264161 |
T |
|
| Q |
253 |
ttcc |
256 |
Q |
| |
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|||| |
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| T |
6264160 |
ttcc |
6264157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 9603439 - 9603689
Alignment:
| Q |
30 |
ttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagct |
129 |
Q |
| |
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||||||| ||||||||||||||| |||||||| |||| |||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||| |
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| T |
9603439 |
ttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttgatagct |
9603538 |
T |
|
| Q |
130 |
tcgatgaagtacgtggactt-ttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgca |
228 |
Q |
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|||||||||| ||| ||||| || |||||||| ||| | ||||||||| ||||| | || |||| ||||||||||| | || |||||||| || |||| |
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| T |
9603539 |
tcgatgaagtgcgt-gacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttccgca |
9603637 |
T |
|
| Q |
229 |
ctgacggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtac |
280 |
Q |
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|||| |||||||||||||||||||||||||| || |||||||||| |||||| |
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| T |
9603638 |
ctgatggtgaacaagtcctcaagtttccaccaccacatgtaatcagaggtac |
9603689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 42694007 - 42693850
Alignment:
| Q |
102 |
aatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtccct |
201 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||| | |||| | | || ||||| |||||||| || |||||| ||||||| | || ||||| | |
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| T |
42694007 |
aatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgt |
42693908 |
T |
|
| Q |
202 |
taccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagtttccacc |
259 |
Q |
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|||| | || || ||||||||||| || || |||||||| ||||||||| |||||| |
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| T |
42693907 |
tacctgttctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccacc |
42693850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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