View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_118 (Length: 291)
Name: NF0740_low_118
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_118 |
 | |
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| [»] scaffold0179 (2 HSPs) |
| |
|
| [»] chr3 (11 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr4 (10 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 7423 - 7700
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |
|
|
| T |
7423 |
cataggccataaataagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctaaatca |
7522 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
7622 |
T |
|
| Q |
214 |
tcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623 |
tcaaagatgttgcaggatccctaagatgtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
7700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 12532 - 12634
Alignment:
| Q |
189 |
ttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12532 |
ttcaacggcacctgggtatgccaaatcaaagatgttgcaggatccctaagatgtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaac |
12631 |
T |
|
| Q |
289 |
cct |
291 |
Q |
| |
|
||| |
|
|
| T |
12632 |
cct |
12634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 26845766 - 26846039
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
26845766 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatca |
26845865 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
26845866 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagc----aaagagaccttcaacggcgcctgggtatgccaaa |
26845961 |
T |
|
| Q |
214 |
tcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845962 |
tcaaagatgttgtaggatccctaagaagtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
26846039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 47537166 - 47537440
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| ||||| | |
|
|
| T |
47537166 |
aggccaaaaagatgaaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagc |
47537265 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||| | | ||||||||||||||||||||||| |||||||||| || |||| |||||||||||| |
|
|
| T |
47537266 |
acccttctttgaaccaaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaaaccttcaacgacatctggttatgccaaatca |
47537365 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|| ||| | |||||||||||| | | || |||| ||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
47537366 |
aatatgctacgggatccctaagagaaacgtcctttgtagtcagcaagtgatatgaaccacgaacagtgtaaccct |
47537440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 33121559 - 33121286
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| || || ||||||||||||| ||||||||||||||| ||||| |||||||||||| |||| ||| ||| ||||| |||||||||| | |
|
|
| T |
33121559 |
aggccataaagatgagaatgcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgagacacacaaagaagcttctgaatcaagc |
33121460 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| |||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
|
|
| T |
33121459 |
acccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaggaaaccttcaacggcacctgactatgccagatca |
33121360 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
|||||| || ||||||||||||| || | || | ||||||| || |||||| ||||| ||||||| ||||||| |
|
|
| T |
33121359 |
aagatgatgcaggatccctaagaggaacgtcgctagaagtcagcatgtgatatgaaccacgaacagagtaaccc |
33121286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 19222023 - 19222243
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||| |||| ||||| |||| |||||| |
|
|
| T |
19222023 |
aggccataaagatgaaaatgcatcacaagataaaaacaaatgt-gcgccgtttcactcatggcacaatctgaaacacacatagaagcttctgtgtcaatc |
19222121 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
19222122 |
accattctttggaccaaattaactttagtaggcaatctac-acgaagaaacctccaagcaaataaagagaccttcaacagcacctggttatgccaaatca |
19222220 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaaga |
239 |
Q |
| |
|
| ||||||| |||||||||||| |
|
|
| T |
19222221 |
aggatgttgcgggatccctaaga |
19222243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 50544120 - 50544396
Alignment:
| Q |
18 |
ggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatca |
117 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||||| ||||||||||||||||| | | ||||||| |||||||| |||| |||||||||| || | || |
|
|
| T |
50544120 |
ggccataaagatgaaaaggtatcacatgataaaaataaatgttgcgccgtttcacaaaagccacaatctgaaacacacatagaagcatctgtgtctagca |
50544219 |
T |
|
| Q |
118 |
cccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttca---acggcacctgggtatgccaaat |
214 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
50544220 |
cccttctttggaccaaattcactttagtaggcaatctatcacgaagcaacctccaagcaaatatagagaccttcaacgacggcacctggttttgccaaat |
50544319 |
T |
|
| Q |
215 |
caaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||| || | ||||| |||| || || |||| ||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
50544320 |
caaagatgctgcatgatccgcaagaggaatgtcctttgtagtcaacaatagataagaaccgcgaactgagtaaccct |
50544396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 48191842 - 48191970
Alignment:
| Q |
162 |
agcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaaca |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| || ||||||||||||| || | || | ||||||| || |
|
|
| T |
48191842 |
agcaacctccaagcaaataaagaagccttcaacggcacctgattatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaagtcagca |
48191941 |
T |
|
| Q |
262 |
agtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| |
|
|
| T |
48191942 |
tgtgatatgaaccacgaacagagtaaccc |
48191970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 43121784 - 43121646
Alignment:
| Q |
141 |
ttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaa |
240 |
Q |
| |
|
||||| || ||||| | ||| ||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||| ||||| |
|
|
| T |
43121784 |
ttagttggtaatctgtcacgaagcaacctccaggcaaagatagagaccttcaacggcacctgattatgctaaatcaacgatgttgcaggatccgtaagag |
43121685 |
T |
|
| Q |
241 |
gagcatcatttgaagtcaacaagtgataagaaccgcgaa |
279 |
Q |
| |
|
||| ||| |||| ||||| ||| ||||| ||||| |||| |
|
|
| T |
43121684 |
gagtatcctttgtagtcagcaaatgataggaaccacgaa |
43121646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 23818599 - 23818737
Alignment:
| Q |
141 |
ttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaa |
240 |
Q |
| |
|
||||| |||||||| | ||| ||||||||| | ||||| | |||||| |||||||||||||| ||||||||||||| ||||||| |||||| |||| |
|
|
| T |
23818599 |
ttagttggcaatctgtcacgaagcaacctctaggcaaagatagagactttcaacggcacctgattatgccaaatcaacgatgttgcaggatctgcaagag |
23818698 |
T |
|
| Q |
241 |
gagcatcatttgaagtcaacaagtgataagaaccgcgaa |
279 |
Q |
| |
|
||| ||| |||| ||||| ||| ||||| ||||| |||| |
|
|
| T |
23818699 |
gagtatcctttgtagtcagcaaatgataggaaccacgaa |
23818737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 25341584 - 25341529
Alignment:
| Q |
21 |
cataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcat |
76 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
25341584 |
cataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccatttcactcat |
25341529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 8695133 - 8695099
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaa |
51 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8695133 |
aggccataaagaagaaaaaacatcacaagataaaa |
8695099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 9047020 - 9046986
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaa |
51 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9047020 |
aggccataaagaagaaaaaacatcacaagataaaa |
9046986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 20208964 - 20208687
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
20208964 |
cataggccataaagaagaaaaagcatcacaagataaaaataaatgttgcgccgtttctctcatgccacaatctgaaacacacaacgaagcttctgaatca |
20208865 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
20208864 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagactttcaacggcacctgggtatgcaata |
20208765 |
T |
|
| Q |
214 |
tcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20208764 |
tcaaagatgttgcaggatccttaagatgtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
20208687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 4923132 - 4923381
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||||||||||| |
|
|
| T |
4923132 |
aggccataaagaagcaaaagcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatcgaagcttctgaatcaatc |
4923231 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4923232 |
acccttctaaggaccaaattatctttattagacaatctatcacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatta |
4923331 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtga |
266 |
Q |
| |
|
|| ||| || ||||||||||||| | || || |||||||||||||||||| |
|
|
| T |
4923332 |
aatatgctgcaggatccctaagatgtgcgtcgtttgaagtcaacaagtga |
4923381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 6049124 - 6049395
Alignment:
| Q |
20 |
ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacc |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||| ||||| |||| || |||||| |
|
|
| T |
6049124 |
ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgtgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgtgtcgatcacc |
6049223 |
T |
|
| Q |
120 |
cttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaag |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
6049224 |
cttcttcggaccaaattatctttagtaggcaacctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacctggtggtgccaaatcaacg |
6049323 |
T |
|
| Q |
220 |
atgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
| |||| |||||||||||| || | || ||| ||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
6049324 |
aagttgcgggatccctaagaggaacgtcctttatagtcagcaagtgatatgaaccgcgaacagtataaccct |
6049395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 7001007 - 7000733
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||| ||||| | |||||||| || |||||||||||| ||||||| |||||||||||| |||||||| ||| ||||| ||||| |||| | |
|
|
| T |
7001007 |
aggccataaaggtgaaaaggtatcacaagttagaaacaaatgttgtaccgtttcactcatgccacaatctgaaacacacagagaagcttctgagtcaagc |
7000908 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| | |||||||||||||||| ||| ||||||||||| |||||||| | |||||||||| ||||||| |||||||||||| |
|
|
| T |
7000907 |
acccttctttgaaccaaattaaccttagtaggcaatctatcacgaagcaacctccacgcaaataagaaaaccttcaacgacacctggttatgccaaatca |
7000808 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| |||||||||||| || | ||||||| |||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
7000807 |
aagatgttgcaggatccctaaggggaacgtcatttgtggtcagcaagcgatatgaaccgcgaacagtgtaaccct |
7000733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 4415935 - 4415669
Alignment:
| Q |
24 |
aaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacccttc |
123 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||||| || ||||||||| |||||||| ||| ||||| ||||| |||| ||||| || |
|
|
| T |
4415935 |
aaagatgaaaaagcgtcacaagatagaaacaaatgttgcgttgtttcactaatgccacaatctgaaacacacagagaagcttctgagtcaagcacccgtc |
4415836 |
T |
|
| Q |
124 |
taaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgt |
223 |
Q |
| |
|
| | | ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4415835 |
tttgaatcaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgattatgccagatcaaagatga |
4415736 |
T |
|
| Q |
224 |
tgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
|| | ||||||||||| || | || | |||||||||| || ||| ||||| ||||||| ||||||| |
|
|
| T |
4415735 |
tgcatgatccctaagaggaacgtctctagaagtcaacatgtaatatgaaccacgaacagagtaaccc |
4415669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 40090238 - 40090376
Alignment:
| Q |
18 |
ggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatca |
117 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||| |||||||||| ||| | | ||||||| ||||| |||| ||||| || | ||||||| |
|
|
| T |
40090238 |
ggccataaagatgaaaaggtatcacaagataaaaacaagtgttgcgccgattcacaaaagccacaataaaaaacacacatagaagcttcggtgtcaatca |
40090337 |
T |
|
| Q |
118 |
cccttctaaggaccaaattatctttagtaggcaatctat |
156 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
40090338 |
cccttctttggaccaaattaactttagtaggcaatctat |
40090376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 34874681 - 34874559
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| ||||| |||||||||| | | ||||||||||||||||| |||| || |||| || ||||| |||| ||||| | || ||||| | |
|
|
| T |
34874681 |
aggccataaagatgaaaatgcatcacaagtt----agaaatgttgcgccgtttcactcaagcgacaatctaaaacacacatagaagcttttgtatcaagc |
34874586 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatcttta |
143 |
Q |
| |
|
| |||||| | ||||||||| ||||| |
|
|
| T |
34874585 |
atccttctttgaaccaaattaacttta |
34874559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 26031387 - 26031603
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||||| ||||||||| |
|
|
| T |
26031387 |
cataggccataaagaagaaaaaacatcacaggataaaaacaaatgttgcgccgtttctctcatgccacaatcagaaacacacatcgaagcttctgaatca |
26031486 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
213 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
26031487 |
atcacctttctaagggccaaattatctttagtaggcaatctattacggagcaacctccaaataaataaagagactttcaatggcacctgggtatgccaaa |
26031586 |
T |
|
| Q |
214 |
tcaaagatgttgtagga |
230 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
26031587 |
tcaaagatgttgcagga |
26031603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 23680060 - 23680334
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| ||||| | |
|
|
| T |
23680060 |
aggccataaagatgaaaaagcatcacaagttaaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagc |
23680159 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||| || ||||||| ||||||| |||||||||||| |
|
|
| T |
23680160 |
acccttctttgaaccaaattaactttagtaggcaaactatcacgaagcaacctccacgcaaataaagaaactttcaacgacacctggttatgccaaatca |
23680259 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| ||||||||||||| || | || |||| ||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
23680260 |
aagatgttgcaggatccctaagaggaacgtcctttgtagtcagcaggtgatatgaaccgcgaacagtgtaaccct |
23680334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 45256067 - 45255804
Alignment:
| Q |
20 |
ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacc |
119 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||| ||||| || |||||| |
|
|
| T |
45256067 |
ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc |
45255968 |
T |
|
| Q |
120 |
cttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaag |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
45255967 |
cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacctggtgatgccaaatcaacg |
45255868 |
T |
|
| Q |
220 |
atgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagt |
283 |
Q |
| |
|
| | || | ||||||| || || | || |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
45255867 |
aagctgcggaatccctaggaggaacgtcctttgtagtcagcaagtgataagaaccgcgaacagt |
45255804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 17658729 - 17659003
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || |||||||||||||||||||| || ||||||||| |||||||| |||| ||||| | || ||||| | |
|
|
| T |
17658729 |
aggccataaagatgaaaacgcatcacaagttaggaacaaatgttgcgccgtttcacttatgccacaatctgaaacacacatggaagcttttgtatcaagc |
17658828 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
17658829 |
acccttctttgaaccaaattaactttagtaggcaatctatctcgaagcaacctccacgcaaataaagaaaccttcaacgacacctggttatgccaaatca |
17658928 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| ||||||||| |||| ||||| | |||||||||||||| |
|
|
| T |
17658929 |
aagatgttgcaggatccctaagaagaatgtccgttgtagtcaacaaacgatatgaaccacaaacagtgtaaccct |
17659003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 36157179 - 36157260
Alignment:
| Q |
141 |
ttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatg |
222 |
Q |
| |
|
||||| |||||||| ||| | ||||||||||| ||||| | ||| ||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
36157179 |
ttagttggcaatctgttatgaagcaacctccaggcaaagatagaaacctttaacgacacctgattatgccaaatcaaagatg |
36157260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 53779943 - 53780217
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| | | |||| |||| | ||| |||| ||||| |
|
|
| T |
53779943 |
aggccataaagaagaaaaaacatcacatgataaaaacaaatgttgcgccgtttcactcatgccacaatccgtaacacacatagcagcttctgtgtcaatt |
53780042 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
53780043 |
acccgtctatggaccaaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacggcacctgtttatgccagatca |
53780142 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| ||||||||||||| || | || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53780143 |
aagatgttgcaggatccctaagaggaacgtcctttgaagtcaacaagtgatatgaaccgcgaacagtgtaaccct |
53780217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 42778136 - 42778409
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||| |||||| ||||| |||| | |
|
|
| T |
42778136 |
aggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtcaagc |
42778235 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| |||||||||||||||||| ||| || | |||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
42778236 |
acccgtctttgaaccaaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaaaccttcaacggcacctggttatgccaaatca |
42778335 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
||||||||| ||||||||| || || | || | ||||||| || ||||| ||||||||||||| ||||||| |
|
|
| T |
42778336 |
aagatgttgcaggatccctcggaggaacgtctctagaagtcagcatatgatatgaaccgcgaacagagtaaccc |
42778409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 10563551 - 10563277
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| | || |||||| |||||||||||| | | |||| |||| | || || | ||||| |
|
|
| T |
10563551 |
aggccataaagaagaaaaaacatcacacgataaaaacaaatgctacgtcgtttcactcatgccacaatccgtaacacacatagccgcttcagtgtcaatt |
10563452 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| |||| ||||||||||| || | ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||| |||||| ||||||| |||| |
|
|
| T |
10563451 |
acccgtctatggaccaaattaactattgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacgtcacctgtttatgccagatca |
10563352 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||| | || ||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10563351 |
aagaagctgcaggatccctaagaggaacgtcctttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
10563277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 20395494 - 20395768
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| ||||| | |
|
|
| T |
20395494 |
aggccaaaaagatgaaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagc |
20395593 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
20395594 |
acccttctttgaaccaaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaaaccttcaacggcacctggttatgccagatca |
20395693 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||| || |||||||||||| | | || | | ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
20395694 |
aagagactgcgggatccctaagagaaacgtccctagtagtcagcatgtgataagaaccacgaacagtgtaaccct |
20395768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 18106803 - 18106576
Alignment:
| Q |
12 |
atcataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaat |
111 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
18106803 |
atcagaggccataaagatgaaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaat |
18106704 |
T |
|
| Q |
112 |
caatcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgcca |
211 |
Q |
| |
|
||| ||||| ||| | ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
18106703 |
caagcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctaactatgcca |
18106604 |
T |
|
| Q |
212 |
aatcaaagatgttgtaggatccctaaga |
239 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
18106603 |
gatcaaagatgatgcaggatccctaaga |
18106576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 30274054 - 30273781
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||| ||||| ||| | |||| | |
|
|
| T |
30274054 |
aggccataaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagc |
30273955 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| ||||| ||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
30273954 |
acccgtctttgaaccaaattagctttaatagacaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgattatgccagatca |
30273855 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
|||||| || ||||||||||||| || | || | ||||||| || |||||| ||||| ||||||| ||||||| |
|
|
| T |
30273854 |
aagatgatgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaaccc |
30273781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 53487195 - 53486922
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||| | |||||| ||| ||||| ||||| |||| | |
|
|
| T |
53487195 |
aggccataaaggtgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcacacatgccacaatcagaaacacacaaagaagcttctgagtcaagc |
53487096 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
53487095 |
acccgtctttcaaccaaattagctttagtaggcaatctatctcgaagcaacctccaagcaaataaagaaaccttcaacgacacctggttatgccaaatca |
53486996 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
||||||||| |||||||||||| || | || ||||||| || |||||| ||||| ||||||| ||||||| |
|
|
| T |
53486995 |
aagatgttgcgggatccctaagaggaacgtctcgagaagtcagcatgtgatatgaaccacgaacagagtaaccc |
53486922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 34322554 - 34322288
Alignment:
| Q |
24 |
aaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacccttc |
123 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||| ||||| ||||| ||| ||||| || |
|
|
| T |
34322554 |
aaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacagagaagcttctgagacaagcacccgtc |
34322455 |
T |
|
| Q |
124 |
taaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgt |
223 |
Q |
| |
|
| | ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
34322454 |
tttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacgacacctgattatgccagatcaaagatga |
34322355 |
T |
|
| Q |
224 |
tgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
|| ||||||||||||| || | || | ||||||| || |||||| ||||| ||||||| ||||||| |
|
|
| T |
34322354 |
tgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaaccc |
34322288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 29213223 - 29213001
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| || | | |||| |||| | ||| |||| ||||| |
|
|
| T |
29213223 |
aggccataaagaagaaaaaacatcacacaataaaaacaaatgttgcgccgtttcactcatgccagaatccgtaacacacatagcagcttctgtgtcaatt |
29213124 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|| | |||| ||||||||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
29213123 |
actcgtctatggaccaaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacggcacctgtttatgccagatca |
29213024 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaaga |
239 |
Q |
| |
|
|||||| || ||||||||||||| |
|
|
| T |
29213023 |
aagatgctgcaggatccctaaga |
29213001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 449946 - 450001
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgttt |
69 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
449946 |
cataggccataaagaagaaaaagcgtcacaagatagaaacaaatgttgcgctgttt |
450001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 11061101 - 11060827
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| ||||| | |
|
|
| T |
11061101 |
aggccataaagatgaaaaagcatcacaagtcaggaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtatcaagc |
11061002 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
11061001 |
acccttctttgaaccaaattaactttagtaggcaatctatcccgaaggaacctccatgcaaataaagaaaccttcaacggcacctggttatgccaaatca |
11060902 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||| || |||||||||||||||| | || ||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11060901 |
aagatgctgcaggatccctaagaagaacgtccgttgtagtcaacatacgataagaaccgcgaacagtgtaaccct |
11060827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 9199499 - 9199221
Alignment:
| Q |
12 |
atcataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaat |
111 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||| ||| |||||| ||||| | |
|
|
| T |
9199499 |
atcagaggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgccatttcactcatgccacaatctgaaacacacaatgaagcttctgagt |
9199400 |
T |
|
| Q |
112 |
caatcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgcca |
211 |
Q |
| |
|
||| ||||| ||| | ||||||| | ||||||||||||||| || ||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
9199399 |
caagcacccgtcttcgaaccaaatcagctttagtaggcaatccatcacgaagcaacctccaagcaaataaagaaaccttcaacgacacctggttatgcca |
9199300 |
T |
|
| Q |
212 |
aatcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
||||||||||| || | ||||||||||| || | || | ||| ||| || ||||| ||||||||||||| ||||||| |
|
|
| T |
9199299 |
aatcaaagatgatgcatgatccctaagaggaacgtctctagaaatcagcatatgatatgaaccgcgaacagagtaaccc |
9199221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 17079433 - 17079159
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||| |||||| ||| |||||||||||| ||||||||||||| ||||| |||| ||| | |
|
|
| T |
17079433 |
aggccataaagatgaaaaaacatcacaagatagaaacaaatgtcgcgccgattcactcatgccacaacctgaaacatacatagaagcttctgtgacaagc |
17079334 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| ||||||| |||||||||| ||| |||||||| |||| ||||| ||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
17079333 |
acccgtctttgaaccaaattaactttagtgggcaatctatcacgaagcaaccttcaagaaaatagagaaaccttcaacggcacctggttatgccagatca |
17079234 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| |||||||||||| || | || | | ||||| || |||||| ||||| |||||||| ||||||| |
|
|
| T |
17079233 |
aagatgttgcgggatccctaagaggaacgtccctagtagtcagcatgtgatatgaaccacgaacagtataaccct |
17079159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 291
Target Start/End: Complemental strand, 17874013 - 17873786
Alignment:
| Q |
64 |
ccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacccttctaaggaccaaattatctttagtaggcaatctattacgtag |
163 |
Q |
| |
|
||||||| |||||||||||| | | |||| | || | ||| |||| ||||| |||| |||| | ||||||||| |||| ||||||||||||| ||| || |
|
|
| T |
17874013 |
ccgtttcactcatgccacaatccgtaacacatatagcagcttctgtgtcaattacccgtctatgtaccaaattaacttttgtaggcaatctatcacgaag |
17873914 |
T |
|
| Q |
164 |
caacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaag |
263 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||| ||||||| |||||||||| || | ||||||||||| || | || ||||||||||||||| |
|
|
| T |
17873913 |
caaccgccgagcaaataaagataccttcaacggcacctgtttatgccagatcaaagatgctgcaagatccctaagaggaacgtcctttgaagtcaacaag |
17873814 |
T |
|
| Q |
264 |
tgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17873813 |
tgataagaaccgcgaacagtgtaaccct |
17873786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 291
Target Start/End: Complemental strand, 18051578 - 18051417
Alignment:
| Q |
130 |
ccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtagg |
229 |
Q |
| |
|
|||||||| ||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| | || |
|
|
| T |
18051578 |
ccaaattaactttagtggacaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctggttatgccagatcaaagagaccgcggg |
18051479 |
T |
|
| Q |
230 |
atccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||||||||| | | || | | ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
18051478 |
atccctaagagaaacgtccctagtagtcaccatgtgataagaaccacgaacagtgtaaccct |
18051417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 41061389 - 41061231
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
41061389 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatca |
41061290 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctcca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41061289 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgaagcaacctcca |
41061231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 26720673 - 26720833
Alignment:
| Q |
131 |
caaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtagga |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26720673 |
caaattatctttagtaggcaatctattacgtagcaacctacaagcaaataaagagactttcaacggcacctgggtatgccaaatcaaagatgttgcagga |
26720772 |
T |
|
| Q |
231 |
tccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720773 |
tccctaagatgtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
26720833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 47106919 - 47106656
Alignment:
| Q |
20 |
ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatcacc |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| ||||| ||| || |||||| |
|
|
| T |
47106919 |
ccataaaggtgaaaatgcatcacaagataaaatcaaatgttgcgccgtttcactcatgccacaatttgaaacacacaaagaagcttctatgtcgatcacc |
47106820 |
T |
|
| Q |
120 |
cttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaag |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
47106819 |
cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacctggtggtgccaaatcaacg |
47106720 |
T |
|
| Q |
220 |
atgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagt |
283 |
Q |
| |
|
| | || ||||||||||| || | || |||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
47106719 |
aagctgcgggatccctaagtggaacgtcctttgtagtcagcaagtgatatgaaccgcgaacagt |
47106656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 10711403 - 10711209
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| |||| | |
|
|
| T |
10711403 |
aggccataaagatgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtgtcaagc |
10711304 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgcca |
211 |
Q |
| |
|
|||| ||| | |||| |||| |||||||||||||||||| ||| ||||||||| ||| ||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
10711303 |
acccatctttgaaccatattaactttagtaggcaatctatcacgaagcaacctctaagaaaataaagaaaccttcaacggcacgtggttatgcca |
10711209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 30111166 - 30110893
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||||||||| |||| | ||||||||| |||||||| ||| ||||| || |||| | |
|
|
| T |
30111166 |
aggccataaagatgaaaaa-catcacaagatagaaacaaatgttgcgccttttcacacatgccacagtctgaaacacacaaagaagctcttgtgtcaagc |
30111068 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
30111067 |
acccgtctttgagccaaattgactttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgattatgccaaatca |
30110968 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||| ||||||||||||||||| | |||| ||| ||||| || |||||| ||||| ||||| ||||| |||| |
|
|
| T |
30110967 |
aagaagttgtaggatccctaagtgaaacatcccttgtagtcagcatgtgatatgaaccccgaactgtgtacccct |
30110893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 17707894 - 17708071
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||| ||||| ||| | |||| | |
|
|
| T |
17707894 |
aggccataaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagc |
17707993 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaac |
194 |
Q |
| |
|
|||| ||| | ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
17707994 |
acccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaac |
17708071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26720594 - 26720672
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaaca |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26720594 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaatctgaaaca |
26720672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 21335463 - 21335349
Alignment:
| Q |
165 |
aacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagt |
264 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| || ||| |||| |||||||| || |
|
|
| T |
21335463 |
aacctccaagcaaagatagagaccttcaacggcacctgattatgtcaaatcaaagatgttgtaggatccacaagaggaatatcttttgtagtcaacaggt |
21335364 |
T |
|
| Q |
265 |
gataagaaccgcgaac |
280 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
21335363 |
gataag-accgcgaac |
21335349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 28098079 - 28097998
Alignment:
| Q |
141 |
ttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatg |
222 |
Q |
| |
|
||||| |||||||| | ||| ||||||||| | ||||| | ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28098079 |
ttagttggcaatctgtcacgaagcaacctctaggcaaagatagaaaccttcaacggcacctgattatgccaaatcaaagatg |
28097998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 7396955 - 7396898
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttct |
71 |
Q |
| |
|
||||||||| || ||||||||| ||| |||| |||||| |||||||||||||||||| |
|
|
| T |
7396955 |
cataggccacaatgaagaaaaatcatagcaagctaaaaataaatgttgcgccgtttct |
7396898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 7396807 - 7396747
Alignment:
| Q |
162 |
agcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatg |
222 |
Q |
| |
|
|||||| ||||| |||| | |||||||||||||| ||||||| ||||| |||||| ||||| |
|
|
| T |
7396807 |
agcaacatccaaacaaaaatagagaccttcaacgacacctggttatgcaaaatcatagatg |
7396747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 7458916 - 7458639
Alignment:
| Q |
14 |
cataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatca |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||| |||| | || || | ||| |
|
|
| T |
7458916 |
cataggccataaagaagaaaaaacatcacacgataaaaacaaatgttgcgccgtttcgctcatgccacaatctgtaacacacatagccgcttcagtgtca |
7458817 |
T |
|
| Q |
114 |
atcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaa |
213 |
Q |
| |
|
|| |||| |||| |||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| || |||||||||||||| ||||||| | |
|
|
| T |
7458816 |
attacccgtctatggaccaaattcactttagtaggcaatctatcacgaagcaaccgccaagcaaataaagaaactttcaacggcacctgtttatgccaga |
7458717 |
T |
|
| Q |
214 |
tcaaagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
||||||| | || ||||||||| ||| || | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458716 |
tcaaagaagctgcaggatccctgagaggaacgtcctttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
7458639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 4077174 - 4077436
Alignment:
| Q |
18 |
ggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatca |
117 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| ||||| |||||||||| | | ||||||| |||||||| |||| ||||| || | |||||||| |
|
|
| T |
4077174 |
ggccataatgatgaaaaggtatcacaagataaaaataaatgccgcgccgtttcacaaaagccacaatctgaaacacacatagaagcttcggtatcaatca |
4077273 |
T |
|
| Q |
118 |
cccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaa |
217 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||| | ||| |||||||||||||||||| |||||||||| || |
|
|
| T |
4077274 |
tccttctttggaccaaattgtctttagtaggcaatctatcacgaagcaacctccaagcaaaaatagaaaccttcaacggcacctggttatgccaaattaa |
4077373 |
T |
|
| Q |
218 |
agatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaac |
280 |
Q |
| |
|
||||| || | ||||| || | || || |||| ||||||||||||||||||||||||||| |
|
|
| T |
4077374 |
agatgctgcatgatccacaataggaatgtcctttgtagtcaacaagtgataagaaccgcgaac |
4077436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 34231597 - 34231869
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||| ||||| ||| | |||| | |
|
|
| T |
34231597 |
aggccataaagatgaaaaagtgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagc |
34231696 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| |||||||||||| ||||| ||| |||| |||||||||||||||||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
34231697 |
acccgtctttgaaccaaattagctttagtaggcagtctatcacgaagcagcctccaagcaaataaagaaaccttcaacgacacctggttatgccatatca |
34231796 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaacc |
289 |
Q |
| |
|
||||| | | ||||||||||| || | || | ||||||| || |||||| ||||| ||||||| |||||| |
|
|
| T |
34231797 |
gagatgacgcatgatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaacc |
34231869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 29113791 - 29113518
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| || ||||| ||| ||||| || || |||| | |
|
|
| T |
29113791 |
aggccaaaaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctaaaacacacaaagaagcttcggagtcaagc |
29113692 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|| | ||| | ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
29113691 |
actcgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgtttatgccatatca |
29113592 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
||| | | | ||||||||||| || | | | ||||||| ||||||||| ||||| ||||||| ||||||| |
|
|
| T |
29113591 |
gagaagacgcatgatccctaagaggaacgtgtctagaagtcagcaagtgatatgaaccacgaacagagtaaccc |
29113518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 28060475 - 28060519
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttg |
61 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
28060475 |
aggccataaagatgaaaaagcatcgcaagataaaaacaaatgttg |
28060519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 1379980 - 1380253
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||| |||||| ||||| |||| | |
|
|
| T |
1379980 |
aggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtcaagc |
1380079 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| |||||||||||||||||| ||| || | |||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
1380080 |
acccgtctttgaaccaaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaaaccttcaacggcacctggttatgccaaatca |
1380179 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccc |
290 |
Q |
| |
|
||||||||| ||||||||| ||| || | || | ||||||| || ||||| ||||||||||||| ||||||| |
|
|
| T |
1380180 |
aagatgttgcaggatccctcagaggaacgtctctagaagtcagcatatgatatgaaccgcgaacagagtaaccc |
1380253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 2999995 - 2999768
Alignment:
| Q |
12 |
atcataggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaat |
111 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
2999995 |
atcagaggccataaagatgaaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaat |
2999896 |
T |
|
| Q |
112 |
caatcacccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgcca |
211 |
Q |
| |
|
||| ||||| ||| | ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
2999895 |
caagcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctaactatgcca |
2999796 |
T |
|
| Q |
212 |
aatcaaagatgttgtaggatccctaaga |
239 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
2999795 |
gatcaaagatgatgcaggatccctaaga |
2999768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 11027122 - 11027214
Alignment:
| Q |
141 |
ttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgtaggatcc |
233 |
Q |
| |
|
||||| ||||| |||| | | ||||||||||| ||||| ||||| ||||||||||||||||| |||| ||||||||||||| || ||||||| |
|
|
| T |
11027122 |
ttagttggcaacctatcatgaagcaacctccacgcaaagaaagaaaccttcaacggcacctgattatgtcaaatcaaagatgatgcaggatcc |
11027214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 182027 - 182301
Alignment:
| Q |
17 |
aggccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacatacattgaagcatctgaatcaatc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||||||| ||||| ||||||||||| ||| |||| |||| ||||| || |||| | |
|
|
| T |
182027 |
aggccataaagaagaaaaaacatcacaagaaagaaacaaatgttgcgctgtttcattcatgccacaatctgtaacacacatagaagcttcaatgtcaagc |
182126 |
T |
|
| Q |
117 |
acccttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcacctgggtatgccaaatca |
216 |
Q |
| |
|
|||| ||| | ||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
182127 |
acccgtctttgaaccaaattaactttagtgggcagtctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctggttatgccagatca |
182226 |
T |
|
| Q |
217 |
aagatgttgtaggatccctaagaagagcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccct |
291 |
Q |
| |
|
|||| || |||||||||||| | | || | | ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
182227 |
aagagactgcgggatccctaagagaaacgtccctagtagtcagcatgtgataagaaccacgaacagtgtaaccct |
182301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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