View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_121 (Length: 285)
Name: NF0740_low_121
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 31687311 - 31687112
Alignment:
| Q |
80 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtatttatcacattttaattataatcta |
179 |
Q |
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| T |
31687311 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtatttatcacatcttaattataatcta |
31687212 |
T |
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| Q |
180 |
tttggagttacatcctctgaagtggggagaaggtctaagggattacaactttcactttatcttacatacttgaagttattgattttatcagtataatcta |
279 |
Q |
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| T |
31687211 |
tttggagtcacatcctctgaagtggggagaaggtctaagggattacaactttcactttatcttacaaacttgaagttattgattttatcattataatcta |
31687112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 32793822 - 32793957
Alignment:
| Q |
142 |
atatttgcctgtatttatcacattttaattataatctatttggagttacatcctctgaagtggggagaaggtctaagggattacaactttcactttatct |
241 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
32793822 |
atatttgcctgtatttatcacactttaattataatctatttgaagttacatcctctgaagtggggagaaggtcaaagtgattacaactttcactttatct |
32793921 |
T |
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| Q |
242 |
tacatacttgaagttattgattttatcagtataatc |
277 |
Q |
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| T |
32793922 |
tacatacttgaagttattgattttatcattataatc |
32793957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 32793776 - 32793822
Alignment:
| Q |
80 |
cttgtatataaacagtgtctagattgaattaataataaataaataaa |
126 |
Q |
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||||||||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
32793776 |
cttgtatataataagtgtctagattgaagtaataataaatgaataaa |
32793822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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