View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_124 (Length: 277)
Name: NF0740_low_124
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 41876595 - 41876797
Alignment:
| Q |
15 |
tatgaagattcgttttggacttgttgttccaaactgttacacgacctaatattcttttcttctatttcagtgatggattgtatacatattaatcataata |
114 |
Q |
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| T |
41876595 |
tatgaagattcgttttgaatttgttgttccaaactgttacacgacctaatattcttttcttctatttcagtgatggattgtatacatattaatcataata |
41876694 |
T |
|
| Q |
115 |
gatgtggcactactacttatttatgtacaaaacgtgggcatggaaagtttgggcaacatgcgcaagttgtacagtatgagttagtgcgaaaatagttaga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41876695 |
gatgtggcactactacttatttatgtacaaaacgtgggcatggaaagtttgggcaacatgcgcaagttgtacaatatgagttagtgcgaaaatagttaga |
41876794 |
T |
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| Q |
215 |
gat |
217 |
Q |
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||| |
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|
| T |
41876795 |
gat |
41876797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 6234123 - 6234179
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagatatatgatcaatgcatatatcttgagttgtttt |
271 |
Q |
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| T |
6234123 |
gatttcgtaaagtgtctcgagagatatatgatcaatgcatatatcttgagttgtttt |
6234179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 13283081 - 13283025
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagatatatgatcaatgcatatatcttgagttgtttt |
271 |
Q |
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| T |
13283081 |
gatttcgtaaagtggctcgagagagatatgatcaatgcatatatcttgagttgtttt |
13283025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 6164334 - 6164389
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagatatatgatcaatgcatatatcttgagttgttt |
270 |
Q |
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|||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6164334 |
gatttcgtaatgtggctcaagagagatatgatcaatgcatatatcttgagttgttt |
6164389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 6139017 - 6139074
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagata--tatgatcaatgcatatatcttgagttgttt |
270 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
6139017 |
gatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgttt |
6139074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 6241909 - 6241959
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagatatatgatcaatgcatatatcttgagt |
265 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6241909 |
gattccgtaaagtggctcgagagagatatgatcaatgcatatatcttgagt |
6241959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 6255137 - 6255185
Alignment:
| Q |
215 |
gatttcgtaaagtggctcgagagatatatgatcaatgcatatatcttga |
263 |
Q |
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|
|||||||||||||| ||||||||| ||||||||||||| |||||||||| |
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| T |
6255137 |
gatttcgtaaagtgactcgagagagatatgatcaatgcttatatcttga |
6255185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 6859322 - 6859282
Alignment:
| Q |
225 |
agtggctcgagagatatatgatcaatgcatatatcttgagt |
265 |
Q |
| |
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||||||| |||||| | |||||||||||||||||||||||| |
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|
| T |
6859322 |
agtggctagagagagacatgatcaatgcatatatcttgagt |
6859282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 7746936 - 7746976
Alignment:
| Q |
225 |
agtggctcgagagatatatgatcaatgcatatatcttgagt |
265 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
7746936 |
agtggctcgagagagatatgatcaatacatataccttgagt |
7746976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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