View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_134 (Length: 263)

Name: NF0740_low_134
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_134
NF0740_low_134
[»] chr7 (4 HSPs)
chr7 (24-229)||(42029828-42030033)
chr7 (114-187)||(10325121-10325194)
chr7 (140-180)||(717501-717541)
chr7 (142-194)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (92-194)||(51080720-51080822)
chr1 (142-194)||(2536530-2536582)
chr1 (142-194)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (92-194)||(40287065-40287167)
chr2 (142-194)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (131-187)||(38998907-38998963)
chr3 (140-187)||(27265807-27265854)
chr3 (142-194)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (140-187)||(13757556-13757603)
chr6 (140-187)||(19047096-19047143)
chr6 (142-194)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (140-194)||(14856970-14857024)
chr5 (92-176)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (139-184)||(14541224-14541269)
chr8 (91-183)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (140-183)||(2087389-2087432)
chr4 (142-194)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (142-194)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 42030033 - 42029828
Alignment:
Q  24 atgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacaaatg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42030033 atgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacagatg 42029934  T
Q  124 ttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaattgatacagctagtcccatataattttttat 223  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||    
T  42029933 ttccataatagtttcaaaaactctcatgttgaatttaatatgaggcaaattaatggggtcgctcgtgaattgatacggttagtcctatataatgtttgat 42029834  T
Q  224 gatgat 229  Q
    ||||||    
T  42029833 gatgat 42029828  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 10325194 - 10325121
Alignment:
Q  114 tagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 187  Q
    ||||||| |||| |||||| |||| || ||||||||||| |||||||||| ||||||||| |||| ||||||||    
T  10325194 tagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctc 10325121  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 717501 - 717541
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggg 180  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  717501 aaaactctcatgttgagtttaataggagacaagctaatggg 717541  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 40901905 - 40901853
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  40901905 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 40901853  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 51080822 - 51080720
Alignment:
Q  92 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 191  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||| |||    
T  51080822 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatga 51080723  T
Q  192 att 194  Q
    |||    
T  51080722 att 51080720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 2536582 - 2536530
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  2536582 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 2536530  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 11351697 - 11351645
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 11351645  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 40287167 - 40287065
Alignment:
Q  92 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 191  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  |||||||||||||  ||||||||||||||||| ||||||||||| ||| |||    
T  40287167 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatga 40287068  T
Q  192 att 194  Q
    |||    
T  40287067 att 40287065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 29894421 - 29894369
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 29894369  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 38998907 - 38998963
Alignment:
Q  131 atagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 187  Q
    |||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  38998907 atagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 27265807 - 27265854
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 187  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  27265807 aaaactctcatgttgagtttaataagagacaaactaatgaggtcgctc 27265854  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 36684916 - 36684968
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 13757603 - 13757556
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 187  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  13757603 aaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctc 13757556  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 19047096 - 19047143
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 187  Q
    ||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  19047096 aaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctc 19047143  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 942704 - 942756
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    |||||| |||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  942704 aactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaatt 942756  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 14857024 - 14856970
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||    
T  14857024 aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatt 14856970  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 32163040 - 32163124
Alignment:
Q  92 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaa 176  Q
    |||||||||||||| |||| | ||||||  |||| |   |||||||  ||||||||||| | |||||||||| ||||||||||||    
T  32163040 ttggttgtattattactgcctgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaactaa 32163124  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 14541224 - 14541269
Alignment:
Q  139 aaaaactctcatgttgagtttaatatgaggcaaactaatggggtcg 184  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||    
T  14541224 aaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcg 14541269  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 11911515 - 11911423
Alignment:
Q  91 tttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtc 183  Q
    ||||||||||| || | || || |||||||  |||  ||||||||||  ||||||||||||| ||||| |||| |||| |||| |||||||||    
T  11911515 tttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtc 11911423  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 2087432 - 2087389
Alignment:
Q  140 aaaactctcatgttgagtttaatatgaggcaaactaatggggtc 183  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  2087432 aaaactctcatgttaaatttaatacgaggcaaactaatggggtc 2087389  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 1394136 - 1394188
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||| || ||||||    
T  1394136 aactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaatt 1394188  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 48113 - 48165
Alignment:
Q  142 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 194  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  48113 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 48165  T

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