View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_137 (Length: 261)
Name: NF0740_low_137
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_137 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 18783724 - 18783472
Alignment:
| Q |
9 |
caacaatataaaaagttttatctcaaacatttcaaatatctgacgaaatttgcaatgtcaacnnnnnnnnctaagatttggtaccgatccatatagacag |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18783724 |
caacaaaataaaaagttttatctcaaacatttcaaatatctgatgaaatttgcaatgtcaacaaaaaaaactaagatttggtaccgatccatatagacag |
18783625 |
T |
|
| Q |
109 |
tgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaacattagcatcagataaaa |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783624 |
tgaaccgtgtttggatcataatctggaagaccacgctgtttccttatgaatgacataactttatgttcaccttctccaggaacattagcatcagataaaa |
18783525 |
T |
|
| Q |
209 |
ttacctaagtcaaaaaacattaaccaaattaataaacaatgaaatactactac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783524 |
ttacctaagtcaaaaaacattaaccaaattaataaacaatgaaatactactac |
18783472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 22872864 - 22872743
Alignment:
| Q |
92 |
ccgatccatatagacagtgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaac |
191 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22872864 |
ccgatcaatatagacagtgaaccgtgattagatcataatcaagaagaccacgttgtttgcttatgaatgacataattttatgttccccttctccatgaac |
22872765 |
T |
|
| Q |
192 |
attagcatcagataaaattacc |
213 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
22872764 |
attagcatcagatataattacc |
22872743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3406 times since January 2019
Visitors: 4813