View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_142 (Length: 255)

Name: NF0740_low_142
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_142
NF0740_low_142
[»] chr6 (3 HSPs)
chr6 (16-214)||(35074132-35074328)
chr6 (47-212)||(17551090-17551253)
chr6 (43-235)||(35073485-35073670)
[»] chr3 (4 HSPs)
chr3 (42-210)||(20384253-20384422)
chr3 (43-214)||(20384923-20385089)
chr3 (52-214)||(8320082-8320242)
chr3 (56-122)||(8321857-8321924)
[»] chr1 (5 HSPs)
chr1 (42-209)||(20816497-20816659)
chr1 (53-213)||(20815835-20815993)
chr1 (60-214)||(50191113-50191265)
chr1 (56-114)||(19173117-19173176)
chr1 (108-149)||(18608971-18609012)
[»] chr7 (2 HSPs)
chr7 (52-146)||(3689953-3690048)
chr7 (52-149)||(20343214-20343312)
[»] chr2 (2 HSPs)
chr2 (52-146)||(16156057-16156152)
chr2 (90-146)||(16156620-16156676)
[»] chr8 (1 HSPs)
chr8 (57-151)||(32319309-32319404)
[»] chr4 (3 HSPs)
chr4 (52-114)||(23941650-23941713)
chr4 (93-150)||(14014930-14014987)
chr4 (83-151)||(14014366-14014434)
[»] chr5 (2 HSPs)
chr5 (57-151)||(7209136-7209231)
chr5 (90-151)||(7209584-7209645)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 35074132 - 35074328
Alignment:
Q  16 atgcaaagagagaacaatnnnnnnnncaatccattcaaagtcattaattgttttgccattttggggta-tgagagttaactccaatggagaagaaaatta 114  Q
    ||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  35074132 atgcaaagagagaacaataaaaaaaacaatccattcaaagtcattaattgttttgccattttggggtaatgagagttaactccaatagagaagaaaatta 35074231  T
Q  115 tagtctaccataccatttattattaatcaatctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactcttg 214  Q
    ||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||  |||||||| ||||| || |||||||||| |||||    
T  35074232 tagtctaccataccatttattattaatcaatctaaacctt---taattgacaatacaattaaaaatcaagatttggagtaagtaaacaaacttattcttg 35074328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 17551253 - 17551090
Alignment:
Q  47 cattcaaagtcattaattgttttgccattttggggta-tgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaat 145  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17551253 cattcaaagtcattaattgttttgccattttggggtactgagagttaactccaatagagaagaaaattatagtctaccataccatttattattaatcaat 17551154  T
Q  146 ctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactct 212  Q
    |||||| ||   ||||||| |||||||||| |||||||||||| |||||||| ||||||||||||||    
T  17551153 ctaaacctt---taattgataatacaattagaagccaagatttggagtacgtaaacaaacttactct 17551090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 35073670 - 35073485
Alignment:
Q  43 aatccattcaaagtcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaat 141  Q
    |||| ||||||||||||| | |||||||||||||| |||| ||||||||||| | |||| ||||||||| |||||| ||||||||| | |||||||||||    
T  35073670 aatcaattcaaagtcattgaatgttttgccattttagggtgatgagagttaatttcaatagagaagaaatttatagcctaccatacaacttattattaat 35073571  T
Q  142 caatctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactcttgtcttggagtcaaaatatcccc 235  Q
    ||||||||||    | ||||||| ||||||||||||  | ||||||| ||||| ||||||||| ||||     |||||||||||||||||||||    
T  35073570 caatctaaac---cattaattgaaaatacaattaaagactaagatttggagtaagtgaacaaatttac-----tcttggagtcaaaatatcccc 35073485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 20384422 - 20384253
Alignment:
Q  42 caatccattcaaagtcattaattgttttgccatttt-ggggta-tgagagttaactcc--aatggagaagaaaattatagtctaccataccatttattat 137  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||  | | ||||||||||||||||||||||||||||||||||||    
T  20384422 caatccattcaaagtcattaattgttttgtcatttttggggtaatgagaggtaactccccattagagaagaaaattatagtctaccataccatttattat 20384323  T
Q  138 taatcaatctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttact 210  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| ||||| || ||||||||||||    
T  20384322 taatcaatctaaacctt---taattgacaatacaattaaaatccaagatttggagtaagtaaacaaacttact 20384253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 20384923 - 20385089
Alignment:
Q  43 aatccattcaaagtcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaat 141  Q
    |||| ||||||||||||| | ||||||||||||||  ||| |||| |||||| | |||| ||||||||||||||||||||||||||||    ||||||||    
T  20384923 aatcaattcaaagtcattgaatgttttgccattttaaggtgatgaaagttaatttcaatagagaagaaaattatagtctaccatacca---cttattaat 20385019  T
Q  142 caatctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactcttg 214  Q
    ||||| || |    | ||||||| ||||||||||||  | ||||||| ||||| |||||||||||||||||||    
T  20385020 caatccaagc---cattaattgaaaatacaattaaagactaagatttggagtaagtgaacaaacttactcttg 20385089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 8320242 - 8320082
Alignment:
Q  52 aaagtcattaattgttttgccattttg-gggtatgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaa 150  Q
    ||||| |||||||||||| | |||||| ||| ||||| |||||||| |||  | |||||||||| ||||||||||| || ||||||||| |||||| ||     
T  8320242 aaagtaattaattgttttactattttgaggggatgagtgttaactctaatacataagaaaattaaagtctaccatatcacttattattattcaatccaag 8320143  T
Q  151 cttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactcttg 214  Q
    |    |  |||||| |||| |||||||||| ||||||| ||||| || | |||||||| |||||    
T  8320142 c---catcaattgataataaaattaaaagctaagatttggagtaagtaaccaaacttaatcttg 8320082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 8321857 - 8321924
Alignment:
Q  56 tcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctac 122  Q
    |||||||||||||| ||||||||  || ||||| |||||||||||| ||||| ||||||| |||||||    
T  8321857 tcattaattgttttaccattttgaagtgatgagtgttaactccaatagagaaaaaaattaaagtctac 8321924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 20816497 - 20816659
Alignment:
Q  42 caatccattcaaagtcattaattgttttgccattttggggtat-gagagttaactccaatggagaagaaaattatagtctaccataccatttattattaa 140  Q
    |||| ||||||||||||||   ||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  20816497 caattcattcaaagtcatt---tgttttgccattttggggtaacgagagttaactcgaatagagaagaaaattatagtctaccataccatttattattaa 20816593  T
Q  141 tcaatctaaacttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttac 209  Q
    ||||||||||| ||   |||||||||||||||||||||| ||||||||  |||| |  |||||||||||    
T  20816594 tcaatctaaacctt---taattgacaatacaattaaaagtcaagatttgaagtaagcaaacaaacttac 20816659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 20815993 - 20815835
Alignment:
Q  53 aagtcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaac 151  Q
    |||||||| | |||||||||||||| |||| ||||||||||| |  ||| |||||||||||||||| ||||||||||| |||||||||||||||  ||||    
T  20815993 aagtcattgaatgttttgccattttagggtgatgagagttaattttaatagagaagaaaattatagcctaccataccacttattattaatcaattcaaac 20815894  T
Q  152 ttttactaattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactctt 213  Q
        | ||||||| ||||||||||||  | ||||||| ||||| ||||||||||||||||||    
T  20815893 ---cattaattgaaaatacaattaaagactaagatttggagtaagtgaacaaacttactctt 20815835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 50191113 - 50191265
Alignment:
Q  60 taattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaacttttact 158  Q
    |||||||||| |||||||||||| ||||| |||||||||||| ||||||||| ||| ||  ||   || || | ||| ||||||||||||| |  |||      
T  50191113 taattgttttaccattttggggtgatgagtgttaactccaatagagaagaaagttaaagcttattgtatcactaatttttaatcaatctaagccatta-- 50191210  T
Q  159 aattgacaatacaattaaaagccaagatttagagtacgtgaacaaacttactcttg 214  Q
     ||| |||||||||||||||| |||||| | ||||| || ||||||||||||||||    
T  50191211 -attaacaatacaattaaaagtcaagatatggagtaagtaaacaaacttactcttg 50191265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 19173117 - 19173176
Alignment:
Q  56 tcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaatta 114  Q
    ||||||||||||||||||||||||| | ||||| |||||||| ||| |||||||||||||    
T  19173117 tcattaattgttttgccattttgggatgatgagtgttaactctaatagagaagaaaatta 19173176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 18608971 - 18609012
Alignment:
Q  108 aaaattatagtctaccataccatttattattaatcaatctaa 149  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  18608971 aaaattaaagtctaccatatcacttattattaatcaatctaa 18609012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 3689953 - 3690048
Alignment:
Q  52 aaagtcattaattgttttgccattttg-gggtatgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatc 146  Q
    ||||| |||||||||||| |||||||| ||| ||||| |||||||| |||  |||||||||||| ||||||||||| || ||||||||| ||||||    
T  3689953 aaagtaattaattgttttaccattttgaggggatgagtgttaactctaatatagaagaaaattaaagtctaccatatcacttattattattcaatc 3690048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 20343312 - 20343214
Alignment:
Q  52 aaagtcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaa 149  Q
    |||||||||||||||||||  |||||| ||| ||||  ||| |||||||  ||||||||||||| || |||||||| || || ||||||||||||||||    
T  20343312 aaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagagaagaaaattaaagcctaccatatcaatttttattaatcaatctaa 20343214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 16156152 - 16156057
Alignment:
Q  52 aaagtcattaattgttttgccattttg-gggtatgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatc 146  Q
    ||||| |||||||||||| |||||||| ||| ||||| |||||||| |||  |||||||||||| ||||||||||| || ||||||||| ||||||    
T  16156152 aaagtaattaattgttttaccattttgaggggatgagtgttaactctaatatagaagaaaattaaagtctaccatatcacttattattattcaatc 16156057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 16156620 - 16156676
Alignment:
Q  90 ttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatc 146  Q
    |||||||||||  |||||||||||| ||||||| ||| || ||||||||| ||||||    
T  16156620 ttaactccaataaagaagaaaattaaagtctactatatcacttattattattcaatc 16156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 32319404 - 32319309
Alignment:
Q  57 cattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaac 151  Q
    |||||||| ||||||||||||| | | ||||| |||||||||||| || |||||||||| ||| |||  || || |||||||||||||||||||||    
T  32319404 cattaattattttgccattttgagatgatgagtgttaactccaatagaaaagaaaattaaagtttactgtatcacttattattaatcaatctaaac 32319309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 23941650 - 23941713
Alignment:
Q  52 aaagtcattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaatta 114  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| ||| |||||||||||||    
T  23941650 aaagtcattaattgttttgccattttgggatgatgagtgttaactctaatagagaagaaaatta 23941713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 14014930 - 14014987
Alignment:
Q  93 actccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaa 150  Q
    |||||||| |||||| ||| || || |||||||| || ||||||||||||||||||||    
T  14014930 actccaatagagaaggaaactaaagactaccatatcaattattattaatcaatctaaa 14014987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 14014434 - 14014366
Alignment:
Q  83 atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaac 151  Q
    ||||| ||| ||| |||| |||||| |||||| ||| |||| || || |||||||||||||||||||||    
T  14014434 atgagtgttgacttcaatagagaaggaaattaaagtttaccgtatcaattattattaatcaatctaaac 14014366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 7209231 - 7209136
Alignment:
Q  57 cattaattgttttgccattttggggt-atgagagttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaac 151  Q
    |||||||||||||||||||||| | | ||||| |||||||||||| || |||||||||| ||  ||   || || |||||||||||||||||||||    
T  7209231 cattaattgttttgccattttgagatgatgagtgttaactccaatagaaaagaaaattaaagcttattgtatcacttattattaatcaatctaaac 7209136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 7209584 - 7209645
Alignment:
Q  90 ttaactccaatggagaagaaaattatagtctaccataccatttattattaatcaatctaaac 151  Q
    |||||| |||| ||||| ||||||| |||||| |||| || ||||||| |||||||||||||    
T  7209584 ttaactacaatagagaataaaattaaagtctatcatatcaattattatgaatcaatctaaac 7209645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2910 times since January 2019
Visitors: 4805