View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_149 (Length: 251)
Name: NF0740_low_149
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_149 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 7500882 - 7501122
Alignment:
| Q |
9 |
caacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacaga |
108 |
Q |
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| T |
7500882 |
caacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagttacaga |
7500981 |
T |
|
| Q |
109 |
tttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaataca |
208 |
Q |
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| T |
7500982 |
tttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaataca |
7501081 |
T |
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| Q |
209 |
aataaatgaggcacatatcttagccaagcatgccttaactc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7501082 |
aataaatgaggcacatatcttagccaagcatgccttaactc |
7501122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 8142580 - 8142344
Alignment:
| Q |
13 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttg |
112 |
Q |
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|||||||||||| ||||| ||||| |||| | |||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||| |
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| T |
8142580 |
aatatccatcaatttatctttataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaagttacagatttg |
8142481 |
T |
|
| Q |
113 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
212 |
Q |
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| T |
8142480 |
tcatagcctccaaagcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaata |
8142381 |
T |
|
| Q |
213 |
aatgaggcacatatcttagccaagcatgccttaactc |
249 |
Q |
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||||||||||| |||||||||| ||| ||||||||| |
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| T |
8142380 |
aatgaggcacacttcttagccaatcataccttaactc |
8142344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 7498094 - 7498299
Alignment:
| Q |
9 |
caacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacaga |
108 |
Q |
| |
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||||| |||||||||| ||||||||||| |||| | |||||||||| ||| ||||||||||| || ||||| |||||| ||| |||||||||| |
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| T |
7498094 |
caacagtatccatcaatttatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaagttacaga |
7498193 |
T |
|
| Q |
109 |
tttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaataca |
208 |
Q |
| |
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|||| ||||||| ||||| ||| |||| |||||||||||| |||||| | |||||||| |||||||||| |||||||||||||||||||||| |||| | |
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| T |
7498194 |
tttgtcatagcctccaaagcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaatgaatata |
7498293 |
T |
|
| Q |
209 |
aataaa |
214 |
Q |
| |
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|||||| |
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|
| T |
7498294 |
aataaa |
7498299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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