View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_150 (Length: 251)
Name: NF0740_low_150
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_150 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 44391728 - 44391879
Alignment:
| Q |
100 |
gttgttgattagactgactttacatttctnnnnnnntatttcacttgaataaaagatagatcgtgaaactaaggaatttttaattatgaaagaaataatt |
199 |
Q |
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| T |
44391728 |
gttgttgattagactgactttacatttttaaaaaaatatttcacttgaataaaagatagatcgtgaaactaaggaatttttaattatgaaagaaataatt |
44391827 |
T |
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| Q |
200 |
ttttgacatcaaaattttgatgttaaatatggtggtccttaatttttgcata |
251 |
Q |
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| T |
44391828 |
ttttgacatcaaaattttgatgttaaatatggtggtccttaatttttgcata |
44391879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 44391649 - 44391686
Alignment:
| Q |
16 |
acctgtgttttgttatacattcaaatgtaataccaacc |
53 |
Q |
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| T |
44391649 |
acctgtgatttgttatacattcaaatgtaataccaacc |
44391686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 46971613 - 46971581
Alignment:
| Q |
201 |
tttgacatcaaaattttgatgttaaatatggtg |
233 |
Q |
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| T |
46971613 |
tttgacatcaaaattttgatgttaaataaggtg |
46971581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 36563846 - 36563886
Alignment:
| Q |
190 |
agaaataattttttgacatcaaaattttgatgttaaatatg |
230 |
Q |
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| T |
36563846 |
agaaatgattttttgacatcaaacttttgatgtcaaatatg |
36563886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 29598833 - 29598885
Alignment:
| Q |
192 |
aaataattttttgacatcaaaattttgatgttaaatatggtggtccttaattt |
244 |
Q |
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||||||| |||||||||| |||||||||||| ||| |||||| || ||||||| |
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| T |
29598833 |
aaataatattttgacatctaaattttgatgtaaaaaatggtgttctttaattt |
29598885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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