View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_16 (Length: 499)
Name: NF0740_low_16
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 7308793 - 7309221
Alignment:
| Q |
21 |
ttgagaattcgaaaagaaaataataatataaaagagcatctaatcgtccaaaggaattcagatttccttattcggaaaaatctcgcaataaccatgtcat |
120 |
Q |
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| T |
7308793 |
ttgagaattcgaaaagaaaataataatataaaagagcatctaatagtccaaaggaattcagatttccttattcggaaaaatctcgcaatcaccatgtcat |
7308892 |
T |
|
| Q |
121 |
taactatcggatcaagattgaacg-tgtagatttcaacgtcgagtcgagatgttggtgtttaaggaaatcaaataaaaactttgtttgaaatcttcattc |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7308893 |
taactatcggatcaagattgaacggtgtagatttcaacgtcgagtcgagatgtcagtgtttaaggaaatcaaataaaaactttgcttgaaatcttcattc |
7308992 |
T |
|
| Q |
220 |
ttagatcttaatccaacagtcaccaacatatgagtccgtgaatgctggattttagcaacagaaaggaatccaaattctcctcc---taacctagcagcct |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
7308993 |
ttagatcttaatccaacagtcaccaacatatgagttcgtgaatgctggattttagcaacagaaagaaatccaaattctcctccttataacctagcagcct |
7309092 |
T |
|
| Q |
317 |
tatgcttaatattaat-aaaatttaacacaaaaataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaacaacatcagtag |
415 |
Q |
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|||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309093 |
tatgcttaatattaataaaaatttaacacacagataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaacaacatcagtag |
7309192 |
T |
|
| Q |
416 |
cagaaataggataaaaaggaagttcagtt |
444 |
Q |
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| T |
7309193 |
cagaaataggataaaaaggaagttcagtt |
7309221 |
T |
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