View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_160 (Length: 243)
Name: NF0740_low_160
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_160 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 37427625 - 37427818
Alignment:
| Q |
41 |
cgatataagactgcattactcaaacagagaaattcaaataaccaacaaccg-tatcttcatatttgaaaagaccctcatcaaatgacttcattcttctag |
139 |
Q |
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| T |
37427625 |
cgatataagactgcattactcaaacagagaaattcaaattaccaaccgtatatatcttcatatttgaaaagaccctcatca----------ttcttctag |
37427714 |
T |
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| Q |
140 |
gatttgcacgggctctagtgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagagtacaat |
239 |
Q |
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| T |
37427715 |
gatttgcacgggctctagtgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagagtacaat |
37427814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 37439637 - 37439797
Alignment:
| Q |
42 |
gatataagactgcattactcaaacagagaaattcaaataaccaacaaccgtatcttcatatttgaaaagaccctcatcaaatgacttcattcttctagga |
141 |
Q |
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| T |
37439637 |
gatataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatat-tttttaaagacttgcatcaaattaattcattc-tatgtga |
37439734 |
T |
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| Q |
142 |
tttgcacgggctctagtgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaa |
205 |
Q |
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| T |
37439735 |
tttgcaagggatcaattgtttgttcttttcagtcttatgttaaatgtatgc-caacaagtctaa |
37439797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 37638366 - 37638449
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgt |
181 |
Q |
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| T |
37638366 |
catatttgaaaagaccctcatccaattaattcattcttctgcgatttgcgatggctctgttgttcgttcttttcaatcttatgt |
37638449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 37394425 - 37394339
Alignment:
| Q |
99 |
atatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgttaaa |
185 |
Q |
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| T |
37394425 |
atatttgaaaacaccctcatcaaattaattcatccttctacgatttaagttggctctattgtttgatcttttcaatcttatgttaaa |
37394339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 37710121 - 37710210
Alignment:
| Q |
92 |
tatcttcatatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgt |
181 |
Q |
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| T |
37710121 |
tatctacatatttgaaaacaccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgt |
37710210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 37822524 - 37822607
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgt |
181 |
Q |
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| T |
37822524 |
catatttgaaaagaccctcatccaattaattcattcttatgcgatttgcgatggctctgttgttcgttcttttcaatcttatgt |
37822607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 37434390 - 37434464
Alignment:
| Q |
158 |
tgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaaga |
232 |
Q |
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| T |
37434390 |
tgtttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaaga |
37434464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 37402538 - 37402451
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgttaaa |
185 |
Q |
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| T |
37402538 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaa |
37402451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 37531720 - 37531807
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgttaaa |
185 |
Q |
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| T |
37531720 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaa |
37531807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 37592824 - 37592911
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgttaaa |
185 |
Q |
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| T |
37592824 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaa |
37592911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 37695215 - 37695302
Alignment:
| Q |
98 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagtgtttgttcttttcaatcttatgttaaa |
185 |
Q |
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| T |
37695215 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaa |
37695302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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