View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_162 (Length: 237)

Name: NF0740_low_162
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_162
NF0740_low_162
[»] chr3 (1 HSPs)
chr3 (16-214)||(55178640-55178838)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 55178838 - 55178640
Alignment:
Q  16 gtctgttgtacaatgggtaatgaacttaccggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55178838 gtctgttgtacaatgggtaatgaacttaccggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaa 55178739  T
Q  116 aatgttattagtttcagtagctgcaagtggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcagactcataacatctctgct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  55178738 aatgttattagtttcagtagctgcaagtggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcggactcataacatcactgct 55178640  T

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