View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_163 (Length: 233)
Name: NF0740_low_163
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_163 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 33388295 - 33388503
Alignment:
| Q |
15 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33388295 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatc |
33388394 |
T |
|
| Q |
115 |
tcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388395 |
tcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
33388494 |
T |
|
| Q |
215 |
tgatctctg |
223 |
Q |
| |
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||||||||| |
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|
| T |
33388495 |
tgatctctg |
33388503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 38779339 - 38779532
Alignment:
| Q |
18 |
aaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctca |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38779339 |
aaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctca |
38779438 |
T |
|
| Q |
118 |
aaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacg |
211 |
Q |
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|
||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
38779439 |
aaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcacg |
38779532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 20816809 - 20816601
Alignment:
| Q |
15 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatc |
114 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||| |
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| T |
20816809 |
attaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatc |
20816710 |
T |
|
| Q |
115 |
tcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||||||| ||||| |||||||| ||||| || |
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|
| T |
20816709 |
tcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcacgccc |
20816610 |
T |
|
| Q |
215 |
tgatctctg |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
20816609 |
agatctctg |
20816601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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