View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_167 (Length: 228)
Name: NF0740_low_167
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_167 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 40582125 - 40582346
Alignment:
| Q |
7 |
gcaaaatgttgtttcagggtatgttagttattgaagagcaccttcgaggaagtgacaatttgcgtcattcatcatcaatgttgtagatggaattggcgga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40582125 |
gcaaaatgttgtttcagggtatgttagttattgaagagcaccttcggggaagtgacaatttgcgtcattcatcatcaatgttgtagatggaattggcgga |
40582224 |
T |
|
| Q |
107 |
agtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattgatggaattctagtcctttatctgcttcaacttcttaaatact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40582225 |
agtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattggtggaactctagtcctttatctgcttcaacttcttaaatact |
40582324 |
T |
|
| Q |
207 |
tggcccaaactaattgaacact |
228 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
40582325 |
tagcccaaactaattgaacact |
40582346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 40569159 - 40569230
Alignment:
| Q |
99 |
ttggcggaagtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattgatggaa |
170 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||| || |||| ||||| ||||||||||||| ||||| |
|
|
| T |
40569159 |
ttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
40569230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3698 times since January 2019
Visitors: 4818