View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_17 (Length: 498)
Name: NF0740_low_17
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 96 - 463
Target Start/End: Original strand, 52072251 - 52072619
Alignment:
| Q |
96 |
cacttggctagaaatttatatctggcttcaacagtgttatactttattttagatacacctactaaannnnnnnnnnnnnnnnacnnnnnnnncttttaat |
195 |
Q |
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| T |
52072251 |
cacttggctagaaatttatatctggcttcaacagtgttatactttattttagatacacctactaaattttttatttttttttacaaaaaaaacttttaat |
52072350 |
T |
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| Q |
196 |
atataaatataatattctattaacttttaaagtgttactctctccgatccttaatataagnnnnnnn-ttattttatagattatgtacttgcagaaatta |
294 |
Q |
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| T |
52072351 |
atataaatataatattctattaacttttaaagtgttactctctccgatccttaatataagaaaaaaaattattttatagattatgtacttgcagaaaata |
52072450 |
T |
|
| Q |
295 |
atataacatagaggggatgatttagatgtgagttcgacatggattttcctggtcctacgtattcctaaagatcttaggtaatcaaagttacatagttctg |
394 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52072451 |
atataacatagaggtgatgatttagatgtgagctggacatggattttcctggtcctacgtattcctaaagatcttaggtaatcaaagttacataattcta |
52072550 |
T |
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| Q |
395 |
tattggatgagactctcttttacgacttaagtgaggggtgtatttatagatacgacaggcaacctattt |
463 |
Q |
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| T |
52072551 |
tattggatgagactctcttttacgccttgagtgaggggtgtatttataaatacgacatgcaacctattt |
52072619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 394
Target Start/End: Complemental strand, 3780839 - 3780748
Alignment:
| Q |
303 |
tagaggggatgatttagatgtgagttcgacatggattttcctggtcctacgtattcctaaagatcttaggtaatcaaagttacatagttctg |
394 |
Q |
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| T |
3780839 |
tagaaggggtgatttagatgtgagttcgatatgggtttccctcgtcctacgtattcttaaggatcttatggaattaaagctacgtagttctg |
3780748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 9826881 - 9826797
Alignment:
| Q |
302 |
atagaggggatgatttagatgtgagttcgacatggattttcctggtcctacgtattcctaaagatcttaggtaatcaaagttacat |
387 |
Q |
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| T |
9826881 |
atagagggggtgacttagatgtgagctcgaca-gggtttccctgatcttacgtatccctaaggatcttagggaatcatagctacat |
9826797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 29203582 - 29203636
Alignment:
| Q |
315 |
tttagatgtgagttcgacatggattttcctggtcctacgtattcctaaagatctt |
369 |
Q |
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|||||||||||| |||| ||||| || |||||||||||||| |||||||||||| |
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| T |
29203582 |
tttagatgtgagctcgatatggaattctctggtcctacgtatccctaaagatctt |
29203636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 45198450 - 45198382
Alignment:
| Q |
303 |
tagaggggatgatttagatgtgagttcgacatggattttcctggtcctacgtattcctaaagatcttagg |
372 |
Q |
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|||||||| ||||||||||||||| || ||| ||||| |||||| |||||||| ||||||||| ||||| |
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| T |
45198450 |
tagagggg-tgatttagatgtgagctcaacagagatttccctggttctacgtatccctaaagatattagg |
45198382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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