View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_175 (Length: 209)
Name: NF0740_low_175
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_175 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 6234179 - 6234110
Alignment:
| Q |
53 |
aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatctctctgacctatg |
122 |
Q |
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| T |
6234179 |
aaaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacctatg |
6234110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 13283025 - 13283094
Alignment:
| Q |
53 |
aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatctctctgacctatg |
122 |
Q |
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| T |
13283025 |
aaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgacttatg |
13283094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 6241959 - 6241896
Alignment:
| Q |
59 |
actcaagatatatgcattgatcatatatctctcgagccactttacgaaatctctctgacctatg |
122 |
Q |
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| T |
6241959 |
actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacctatg |
6241896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 6164389 - 6164321
Alignment:
| Q |
54 |
aaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatctctctgacctatg |
122 |
Q |
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| T |
6164389 |
aaacaactcaagatatatgcattgatcatatctctcttgagccacattacgaaatccctctgacttatg |
6164321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 6139074 - 6139004
Alignment:
| Q |
54 |
aaacaactcaagatatatgcattgatcata--tatctctcgagccactttacgaaatctctctgacctatg |
122 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||||||| |
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| T |
6139074 |
aaacaactcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttgacctatg |
6139004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 6255185 - 6255127
Alignment:
| Q |
61 |
tcaagatatatgcattgatcatatatctctcgagccactttacgaaatctctctgacct |
119 |
Q |
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| T |
6255185 |
tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacct |
6255127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
| Q |
59 |
actcaagatatatgcattgatcatatatctctcgagccact |
99 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||| |
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| T |
6859282 |
actcaagatatatgcattgatcatgtctctctctagccact |
6859322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
| Q |
59 |
actcaagatatatgcattgatcatatatctctcgagccact |
99 |
Q |
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||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
7746976 |
actcaaggtatatgtattgatcatatctctctcgagccact |
7746936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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