View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_181 (Length: 201)
Name: NF0740_low_181
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_181 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 39615589 - 39615669
Alignment:
| Q |
37 |
tcttaaatttaaataatctccttttttccgtcatttccctccaaccaattcc----caccaaccgaaaaaccctaaaataa |
113 |
Q |
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| T |
39615589 |
tcttaaatttaaataatctcctttttcccgtcatttccctccaaccaattcccacgcaccaaccaaaaaaccataaaataa |
39615669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 39626590 - 39626621
Alignment:
| Q |
124 |
tcactttccctcttcatttccctccaacaacc |
155 |
Q |
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| T |
39626590 |
tcactttccctcttcatttccctccaacaacc |
39626621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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