View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_22 (Length: 475)
Name: NF0740_low_22
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 30 - 458
Target Start/End: Original strand, 27046215 - 27046643
Alignment:
| Q |
30 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046215 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27046314 |
T |
|
| Q |
130 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046315 |
caattagcagttgcttctaagaatggaacaccatattctgcaccaccaacaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
27046414 |
T |
|
| Q |
230 |
ctgggaaacggattgagaagttggtttagtggtttgaggnnnnnnntatagaagttgaagatataagaaagtgtgcctatatgattcattaatgaggcat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |
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| T |
27046415 |
ctgggaaacggattgagaagttggtttagtggtttgaggaaaaaaatatagaagttgaagatataagaaagtgagcctatatgattcattaacgagacat |
27046514 |
T |
|
| Q |
330 |
tcttctatggtcacaagcataaataaataaataaacggtgtttggatacaaacacataaatttatgctataacaaatcattagtaacatttatcattata |
429 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27046515 |
tcttctatgatcacaagcataaataaataaataaacggtgtttggatacacacacataaatttatgctataacaaatcattagtaacatttatcattata |
27046614 |
T |
|
| Q |
430 |
aaatttcttttttacaagcatacctgcaa |
458 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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|
| T |
27046615 |
aaatttcttttttacaagtatacctgcaa |
27046643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 27086274 - 27086504
Alignment:
| Q |
30 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
129 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27086274 |
caaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27086373 |
T |
|
| Q |
130 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| || |||||| |||||| ||||| |
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|
| T |
27086374 |
caattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcgactctaagtcttccgtcaccagcatgtttcactagtctac |
27086473 |
T |
|
| Q |
230 |
ctgggaaacggattgagaagttggtttagtg |
260 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |
|
|
| T |
27086474 |
ctgggaaatggagtgagaagttggtttagtg |
27086504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 27041796 - 27042030
Alignment:
| Q |
30 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
129 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27041796 |
caaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27041895 |
T |
|
| Q |
130 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
229 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| || || |||||| |||||| ||||| |
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|
| T |
27041896 |
caattagcatatgcttctaagaatggaacaccatattctgcaccacctagaccaaactcgactctaagtcttccatcaccagcatgtttcactagtctac |
27041995 |
T |
|
| Q |
230 |
ctgggaaacggattgagaagttggtttagtggttt |
264 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||| |
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|
| T |
27041996 |
ctgggaaacgcagtgagatgttggtttagtggttt |
27042030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 27063145 - 27063283
Alignment:
| Q |
30 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| |
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|
| T |
27063145 |
caaagggtaatttttatcttgaggagaaggaagatcaagcaccaaatgttttgcaatttctgtgttagtattgtccaggtaatgaagagaagaaagtgtg |
27063244 |
T |
|
| Q |
130 |
caattagcagttgcttctaagaatggaacaccatattct |
168 |
Q |
| |
|
|| |||||||||||||| ||||| ||||| ||| ||||| |
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|
| T |
27063245 |
cagttagcagttgcttccaagaacggaacgccaaattct |
27063283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 27070218 - 27070360
Alignment:
| Q |
30 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
129 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||| | ||||||||| || |||| ||||||||||| ||||||||| |||||||| ||| |
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|
| T |
27070218 |
caaagggtaatttttatcctgaggagtaggaaaatcaagcaccaaatgttttgcaatttcagtgttagtattgtccaggtaatgaagggaagaaagtgtg |
27070317 |
T |
|
| Q |
130 |
caattagcagttgcttctaagaatggaacaccatattctgcac |
172 |
Q |
| |
|
|| |||||||||||||| ||||| ||||| ||| ||||||||| |
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|
| T |
27070318 |
cagttagcagttgcttccaagaacggaacgccaaattctgcac |
27070360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 27098964 - 27099065
Alignment:
| Q |
63 |
atcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacacca |
162 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||| |
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|
| T |
27098964 |
atcaagcaccaaatgttttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcaattgcttccaagaatggaacacca |
27099063 |
T |
|
| Q |
163 |
ta |
164 |
Q |
| |
|
|| |
|
|
| T |
27099064 |
ta |
27099065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 27105978 - 27106064
Alignment:
| Q |
78 |
ttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccata |
164 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
27105978 |
ttttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcacttgcttccaagaatggaacaccata |
27106064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 458
Target Start/End: Original strand, 27042584 - 27042620
Alignment:
| Q |
422 |
tcattataaaatttcttttttacaagcatacctgcaa |
458 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27042584 |
tcattataaaatttcttttttacaagtatacctgcaa |
27042620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 27042044 - 27042078
Alignment:
| Q |
389 |
atttatgctataacaaatcattagtaacatttatc |
423 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
27042044 |
atttatgctataacaattcattagtaacatttatc |
27042078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 19414961 - 19415089
Alignment:
| Q |
43 |
ttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttg |
142 |
Q |
| |
|
||||||||||| |||||| ||||| |||||| | |||||| | |||||||| | |||||||||||||| ||||||| |||| |||| |||||||||| |
|
|
| T |
19414961 |
ttatcttgaggggaaggaggatcaaacaccaattgttttgccacttctgtgtctgcattgtccaagtaattaagagaatcaaggctgcagttagcagttg |
19415060 |
T |
|
| Q |
143 |
cttctaagaatggaacaccatattctgca |
171 |
Q |
| |
|
|||| ||||||||||| ||| |||||||| |
|
|
| T |
19415061 |
cttccaagaatggaactccaaattctgca |
19415089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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