View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_23 (Length: 472)
Name: NF0740_low_23
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 661555 - 661429
Alignment:
| Q |
319 |
tcaatcaattatagctttaattctaactaccagctatatattcaaaaccacatttatcatattcattgggtcacta--ttatatacctcattagtgctac |
416 |
Q |
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| T |
661555 |
tcaatcaattatagctttaattctaactaccagctatatattcaaaaccacatttatcatattcattgggtcactatgttatatacctcattagtgctac |
661456 |
T |
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| Q |
417 |
atatagctaggagcgcacaataatatc |
443 |
Q |
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| T |
661455 |
atatagctaggagcgcacaataatatc |
661429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 661732 - 661602
Alignment:
| Q |
118 |
aaatgttattaattaaaataatactaatcactcatttacttagtatactatttcatagactccactcttctttaaattggttttattatataataaaata |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
661732 |
aaatgttattaattaaaataatactaatgactcatttacttagtatagtatttcatagactccactcttctttaaattggttttattatataatataata |
661633 |
T |
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| Q |
218 |
tagtataacaacatatgtataacattttgct |
248 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
661632 |
cagtataacaacgtatgtataacattttgct |
661602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 661824 - 661756
Alignment:
| Q |
31 |
gaaataatggacacgagtcacgcggataggatatatcttgagcatataatacacaccttttctactctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
661824 |
gaaataatggacacgagtcacgcggataggatatatcttgagcatataatacacaccttttctactctc |
661756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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