View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_27 (Length: 466)
Name: NF0740_low_27
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_27 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 43922732 - 43922484
Alignment:
| Q |
3 |
catctccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcac |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43922732 |
catctccaacaatgtgccaatactatttaaagaagatacattgaaacccatccggaccagaggctttgtaggatttcatggagtgaagggcggctgtcac |
43922633 |
T |
|
| Q |
103 |
ttctttcttggttatgaggctagtaagtgcgtttttgtcggcatcctcaaaggtggggtggctgccttcattgaagacatggttatgatgatgatggtga |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43922632 |
ttctttcttggttatggggctagtaagtgtgtttctgtcggcatcctcaaaggtggggtggctgcc-tcattgaagacatggttatgatgatgatggtga |
43922534 |
T |
|
| Q |
203 |
ttcccacataaaagatttttgaaatattttaatggagaagcttgggtatt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43922533 |
ttcccacataaaagatttttgaaatattttaatgaagaagcttgggtatt |
43922484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 48846535 - 48846322
Alignment:
| Q |
11 |
acaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcacttctttct |
110 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48846535 |
acaatgtgccaatactgtttaaagaagatacattgaaacccatcaggaccaggggctttgtaaggtttcatggagtgaagggcggctgtcacttctttct |
48846436 |
T |
|
| Q |
111 |
tggttatgaggctagtaagtgcgtttttgtcggcatcctcaaaggtggggtggctgccttcattgaagacatggttatgatgatgatggtgattcccaca |
210 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||||| | | |||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
48846435 |
tggttatggggctagtgagtgcgtttctgtcggcatcctctaggctggggtggcttccttcatcgaagacatggtt---------atggtgattcccaca |
48846345 |
T |
|
| Q |
211 |
taaaagatttttgaaatatttta |
233 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
48846344 |
aaaaaggtttttgaaatatttta |
48846322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 46785030 - 46785108
Alignment:
| Q |
8 |
ccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagt |
86 |
Q |
| |
|
|||||||| ||||| || | ||| |||||||| ||||| || |||||||||||| | |||||||||||||||||||| |
|
|
| T |
46785030 |
ccaacaatgtgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcatggagt |
46785108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 1579712 - 1579942
Alignment:
| Q |
3 |
catctccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcac |
102 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1579712 |
catctccaacaatgtgccaatattttttaaagaagatacattgaaactcatccgaaccaggggctttgtagggtttcatggagtgaagagcggcagtcac |
1579811 |
T |
|
| Q |
103 |
ttctttcttggttatgaggctagtaagtgcgtttttgtcggcatcctcaaaggtggggtggctgccttcattgaagacatggttatgatgatgatggtga |
202 |
Q |
| |
|
|||||||||||||||| |||||| || | ||| ||||||||||||| | |||||||||| | | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
1579812 |
ttctttcttggttatggggctagcgagagtatttctgtcggcatcctctagggtggggtggatacattcattgaagacatggttatggtgatgatggtga |
1579911 |
T |
|
| Q |
203 |
ttcccacataaaagatttttgaaatatttta |
233 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
1579912 |
ttcccacataaaaggtttttgaaatatttta |
1579942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 8564 - 8438
Alignment:
| Q |
3 |
catctccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcac |
102 |
Q |
| |
|
||||||||||||| |||||| | | ||||||||| ||||| ||||| |||| || |||| || ||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
8564 |
catctccaacaatgtgccaaaattgtttaaagaaaatacaatgaaaaccatcagggccaggggctttgtagggcttcatggagtggagggcggttgtcac |
8465 |
T |
|
| Q |
103 |
ttctttcttggttatgaggctagtaag |
129 |
Q |
| |
|
|||||| || |||| | | |||||||| |
|
|
| T |
8464 |
ttctttttttgttaagggcctagtaag |
8438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 23133137 - 23133222
Alignment:
| Q |
8 |
ccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc |
93 |
Q |
| |
|
|||||||| ||||| |||| || |||||||| || || || |||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
23133137 |
ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggc |
23133222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 20284444 - 20284359
Alignment:
| Q |
8 |
ccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc |
93 |
Q |
| |
|
|||||||| ||||| |||| || |||||||| || || || |||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
20284444 |
ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggc |
20284359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 26790918 - 26790819
Alignment:
| Q |
3 |
catctccaacaatatgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcac |
102 |
Q |
| |
|
|||| |||||||| ||| |||| | |||||| || ||||| ||||| |||| || |||| || ||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
26790918 |
catcaccaacaatgtgcgaatattgtttaaaaaaaatacaatgaaaaccatcggggccaggggctttgtagggcttcgtggagtggagggcggctgtcac |
26790819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 11896700 - 11896658
Alignment:
| Q |
51 |
catccggaccagaggttttgtagggtttcatggagtgaagggc |
93 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
11896700 |
catccggaccaggggctttgtagggtttcatggagttaagggc |
11896658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3649 times since January 2019
Visitors: 4816