View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_29 (Length: 457)

Name: NF0740_low_29
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_29
NF0740_low_29
[»] chr7 (11 HSPs)
chr7 (11-430)||(1373787-1374206)
chr7 (341-430)||(1358565-1358654)
chr7 (341-430)||(1394664-1394753)
chr7 (341-430)||(1350659-1350748)
chr7 (341-430)||(1384313-1384402)
chr7 (341-430)||(1390418-1390507)
chr7 (11-91)||(1350494-1350574)
chr7 (11-91)||(1384148-1384228)
chr7 (11-91)||(1390253-1390333)
chr7 (11-91)||(1394499-1394579)
chr7 (11-91)||(1358400-1358480)
[»] chr6 (4 HSPs)
chr6 (348-430)||(7007237-7007319)
chr6 (348-430)||(7010315-7010397)
chr6 (15-80)||(7009807-7009872)
chr6 (18-80)||(7006716-7006778)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 1373787 - 1374206
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtctaatattacttgcaatatctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1373787 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtctaatattacttgcaatatctt 1373886  T
Q  111 ctcaatattaataatcgttgttttgtcgcggccaaggtcacagtcacaaatttgtatttaaaacccttttaatttgtgtgtggccgatgtggcctcaatt 210  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1373887 ctcaatatttataatcgttgttttgtcacggccaaggtcacagtcacaaatttgtatttaaaacccttttaatttgtgtgtggccgatgtggcctcaatt 1373986  T
Q  211 gctgtcgaactgcggtttcaataacatcaaaaaccgttatgtcgcgaccctgattgtggtcacggacctttatttaaaatccatttgagttttgatggtt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1373987 gctgtcgaactgcggtttcaataacatcaaaaaccgttatgtcgcgaccctgatcgtggtcacggacctttatttaaaatccatttgagttttgatggtt 1374086  T
Q  311 aacatatgtttgttttgacttctacttgcttacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactgga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1374087 aacatatgtttgttttgacttctacttgcttacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactgga 1374186  T
Q  411 caatgtggaagttgcctttg 430  Q
    ||||||||||||||||||||    
T  1374187 caatgtggaagttgcctttg 1374206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 1358565 - 1358654
Alignment:
Q  341 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1358565 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttg 1358654  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 1394664 - 1394753
Alignment:
Q  341 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1394664 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttg 1394753  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 1350659 - 1350748
Alignment:
Q  341 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  1350659 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttg 1350748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 1384313 - 1384402
Alignment:
Q  341 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  1384313 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttg 1384402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 1390418 - 1390507
Alignment:
Q  341 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  1390418 tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttg 1390507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1350494 - 1350574
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1350494 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtcta 1350574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1384148 - 1384228
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1384148 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtcta 1384228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1390253 - 1390333
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1390253 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtcta 1390333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1394499 - 1394579
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1394499 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtcta 1394579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1358400 - 1358480
Alignment:
Q  11 cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta 91  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1358400 cagagaacaattggccaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtcta 1358480  T

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Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 7007237 - 7007319
Alignment:
Q  348 agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  7007237 agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttg 7007319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 7010315 - 7010397
Alignment:
Q  348 agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttg 430  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  7010315 agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttg 7010397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 7009807 - 7009872
Alignment:
Q  15 gaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgag 80  Q
    ||||||||||| || ||||| ||||||||||| ||||||||||||||| |||| ||||||||||||    
T  7009807 gaacaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatttgag 7009872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 7006716 - 7006778
Alignment:
Q  18 caattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgag 80  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||| |||| ||||||||||||    
T  7006716 caattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatttgag 7006778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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