View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_3 (Length: 916)

Name: NF0740_low_3
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_3
NF0740_low_3
[»] chr8 (10 HSPs)
chr8 (488-887)||(31661511-31661909)
chr8 (82-422)||(31661100-31661445)
chr8 (303-383)||(44004330-44004410)
chr8 (303-383)||(13751454-13751534)
chr8 (305-383)||(6976578-6976656)
chr8 (303-420)||(9946684-9946801)
chr8 (307-383)||(24534902-24534978)
chr8 (303-383)||(21466899-21466979)
chr8 (589-644)||(7409407-7409462)
chr8 (332-383)||(45231612-45231663)
[»] chr6 (12 HSPs)
chr6 (495-681)||(32549404-32549590)
chr6 (296-422)||(17364204-17364331)
chr6 (303-422)||(26497865-26497984)
chr6 (303-383)||(1112507-1112587)
chr6 (585-677)||(19220962-19221054)
chr6 (303-422)||(7201074-7201192)
chr6 (296-422)||(29288423-29288550)
chr6 (303-378)||(609630-609705)
chr6 (498-678)||(1038297-1038477)
chr6 (303-383)||(10669971-10670051)
chr6 (581-663)||(34205908-34205990)
chr6 (585-664)||(33794494-33794573)
[»] chr7 (13 HSPs)
chr7 (495-678)||(33487183-33487366)
chr7 (296-422)||(14802638-14802764)
chr7 (296-422)||(15249631-15249757)
chr7 (528-679)||(24972897-24973048)
chr7 (303-420)||(44767334-44767450)
chr7 (307-383)||(38190283-38190359)
chr7 (303-422)||(33540107-33540225)
chr7 (605-679)||(20183028-20183102)
chr7 (495-622)||(35582244-35582372)
chr7 (303-378)||(40230899-40230974)
chr7 (303-383)||(19468337-19468416)
chr7 (303-422)||(27224296-27224412)
chr7 (504-562)||(42082748-42082806)
[»] scaffold0125 (1 HSPs)
scaffold0125 (296-416)||(5778-5899)
[»] chr1 (9 HSPs)
chr1 (296-389)||(29864675-29864768)
chr1 (307-383)||(50509793-50509869)
chr1 (303-378)||(9672504-9672579)
chr1 (303-421)||(24892022-24892140)
chr1 (495-593)||(28190485-28190583)
chr1 (496-678)||(37543745-37543926)
chr1 (303-383)||(26687705-26687785)
chr1 (336-422)||(50262444-50262529)
chr1 (303-383)||(23688394-23688474)
[»] chr5 (4 HSPs)
chr5 (296-389)||(17535770-17535863)
chr5 (307-383)||(27246224-27246300)
chr5 (303-383)||(11245391-11245471)
chr5 (303-383)||(22868043-22868123)
[»] chr2 (12 HSPs)
chr2 (307-378)||(30707048-30707119)
chr2 (303-383)||(26290425-26290505)
chr2 (303-378)||(2104096-2104171)
chr2 (491-664)||(29927711-29927883)
chr2 (303-383)||(5868993-5869073)
chr2 (585-679)||(32978969-32979063)
chr2 (612-677)||(3256966-3257031)
chr2 (303-383)||(18242158-18242238)
chr2 (619-678)||(37210219-37210278)
chr2 (493-679)||(35426375-35426560)
chr2 (303-383)||(44259836-44259916)
chr2 (538-644)||(35494924-35495030)
[»] chr4 (15 HSPs)
chr4 (296-421)||(16061457-16061583)
chr4 (303-383)||(6131958-6132038)
chr4 (497-657)||(53711686-53711845)
chr4 (495-662)||(47533722-47533889)
chr4 (494-563)||(29010105-29010174)
chr4 (303-383)||(6087060-6087140)
chr4 (303-379)||(6166386-6166462)
chr4 (303-383)||(32727986-32728066)
chr4 (303-373)||(18886184-18886254)
chr4 (495-591)||(22579232-22579328)
chr4 (495-563)||(24894750-24894818)
chr4 (619-678)||(24894662-24894721)
chr4 (303-378)||(36441099-36441173)
chr4 (496-622)||(55520939-55521065)
chr4 (310-383)||(38138766-38138839)
[»] chr3 (4 HSPs)
chr3 (303-383)||(54561108-54561188)
chr3 (495-563)||(1699932-1700000)
chr3 (495-610)||(40362025-40362140)
chr3 (303-378)||(42624768-42624843)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-160; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 488 - 887
Target Start/End: Original strand, 31661511 - 31661909
Alignment:
Q  488 ctttgaggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgat 587  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  31661511 ctttgaggaaaattgtttttcgcatttcactcaatgataagaaacactatgaaatgacaattttaacctcaaattcaatcaatagttaaccaccattgat 31661610  T
Q  588 taaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttcttctttgaa 687  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||| ||||| ||||||||||||| ||    
T  31661611 taaaatacatcaacagttaactgtcgatggagttatattgataatttcgtgatgtttcgtagaaacctttgacgtgggaatataaattttcttctttaaa 31661710  T
Q  688 tgggggatagataatggacagtactcnnnnnnnncttgaggaccgtcactttggaagactgagcccaattaaactggttgcactctccaaccagctataa 787  Q
    |||||||||||||||||||| |||||        |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  31661711 tgggggatagataatggacaatactc-tttttttcttgaggaccgtcactttggaagacccagctcaattaaactggttgcactctccaaccagctataa 31661809  T
Q  788 atgcgggtgatttcattgcatctagttcgtggaaaggataaagctgcatatcttcgtcttctgtcttctatataaactcattatatattacggttgtttc 887  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31661810 atgcgggtgatttcattgcatctaattcgtggaaaggataaagctgcatatcttcgtcttctgacttctatataaactcattatatattacggttgtttc 31661909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 82 - 422
Target Start/End: Original strand, 31661100 - 31661445
Alignment:
Q  82 ctccccaacgaaggttagtcatttatgtacagcggtataaacgtcgtaccaatatcacgatnnnnnnnnttaaca---atatatataaccatcatacttt 178  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||   ||||||||||||||||||||||    
T  31661100 ctccccagcgaaggttagtcatttatatacagcggtataaacgtcgtaccaatatcacgataaaaaaaaataacaacaatatatataaccatcatacttt 31661199  T
Q  179 cttgttttgctctaacctaaattaagcattttataatgcctcggggctgttcctatgaattggaggttcggctctcatagtaaaaataggctcttaat-n 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||      
T  31661200 cttgttttgctctaacctaaattaagcattttataatgcctcggggccgttcctatgaattggaagttcggctctcatagtaaaaataggctcttaataa 31661299  T
Q  278 nnnnnncaannnnnnnnnaaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttt 377  Q
           ||         ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31661300 aaaaaataattttttttaaaagaacaatcttctatttgaattgaaaataacttccgtataatgatcattattcatcaaaatcaaaattagcaattatttt 31661399  T
Q  378 ttctaaggaacaca-ttttttcccttagaaatagaaacatggaaca 422  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  31661400 ttctaaggaacacatttttttcccttataaatagaaacatggaaca 31661445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 44004330 - 44004410
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  44004330 aatcttctatttaaattgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaa 44004410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 13751454 - 13751534
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||||||| |||| ||||||||||||||||||| ||||    
T  13751454 aatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttactaa 13751534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 6976578 - 6976656
Alignment:
Q  305 tcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    ||||| |||| ||||||||||||| | ||||||||||| |||||||| |||||| ||||||||||||||||||| ||||    
T  6976578 tcttcaatttaaattgaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttactaa 6976656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 9946801 - 9946684
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| |||||||||||||| ||||||||||| |||| ||     ||||||  |||    
T  9946801 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaaagatgtgcttttttaactt 9946702  T
Q  403 agaaatagaaacatggaa 420  Q
    | ||||||||||||||||    
T  9946701 aaaaatagaaacatggaa 9946684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 24534978 - 24534902
Alignment:
Q  307 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||| ||| |||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  24534978 ttctgtttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaa 24534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 21466899 - 21466979
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||| |||  ||||||||||||   | ||||||||| ||||||||| |||||||||||||||||||| |||| ||||    
T  21466899 aatcttctgtttatattgaaaataacactcttataatgattattagccatgaaaatcaaaattagcaattagttttactaa 21466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 7409462 - 7409407
Alignment:
Q  589 aaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgttt 644  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  7409462 aaaattcatcgacagttaactgtcgatggagttatattgataaattggtgatgttt 7409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 45231663 - 45231612
Alignment:
Q  332 cgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    ||||||||| | |||||||| |||||| ||||||||||||||||||| ||||    
T  45231663 cgtataatggttattagccaccaaaattaaaattagcaattatttttactaa 45231612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 495 - 681
Target Start/End: Original strand, 32549404 - 32549590
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 594  Q
    |||||||| |||||||||||||| ||||| ||||||||||  | ||||||||| ||||||| ||||||  |||  |||||||| ||||  | |||||||     
T  32549404 gaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaatt 32549503  T
Q  595 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttcttc 681  Q
    ||||| ||| ||| ||||||||  ||||||||| |||||| ||| |||||| ||||||| |||||||||| || |||||||||||||    
T  32549504 catcggcagttaattgtcgatgaagttatattggtaatttcgtggtgtttcatagcaacttttgatgtgggaacatcaattttcttc 32549590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 296 - 422
Target Start/End: Complemental strand, 17364331 - 17364204
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacac--att 393  Q
    ||||||||||||||||||| ||||||||| |||  |||||||||||| |||||||| |  |||||||||||||||||||||||  ||||| ||||   ||    
T  17364331 aaagagcaatcttctatttaaattgaaaagaacagccgtataatgattattagcca-ccgaatcaaaattagcaattatttttattaagggacacgtttt 17364233  T
Q  394 ttttcccttagaaatagaaacatggaaca 422  Q
    ||||  |||||||||||||||||||||||    
T  17364232 tttttacttagaaatagaaacatggaaca 17364204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 303 - 422
Target Start/End: Original strand, 26497865 - 26497984
Alignment:
Q  303 aatcttctatttgaattgaaaa-taacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccct 401  Q
    |||||||||||| ||||||||| ||||   ||||||||||| |||||||| | |||||||||||||||||||||||| |||| | ||   ||||||  ||    
T  26497865 aatcttctatttaaattgaaaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaag-acgtgttttttaact 26497963  T
Q  402 tagaaatagaaacatggaaca 422  Q
    |||||||||||||||||||||    
T  26497964 tagaaatagaaacatggaaca 26497984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 1112507 - 1112587
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| ||||||||||||| | ||||||||| | |||||||| | |||| ||||||||||||||||||| ||||    
T  1112507 aatcttctatttaaattgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttactaa 1112587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 585 - 677
Target Start/End: Complemental strand, 19221054 - 19220962
Alignment:
Q  585 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaatttt 677  Q
    ||||||||| ||||| ||  |||||||||||| ||||||||| ||||||| ||  |||||| || ||| ||||||||||||||||||||||||    
T  19221054 gattaaaattcatcggcatttaactgtcgatgaggttatattaataatttcgtagtgtttcctaacaatctttgatgtggaaatatcaatttt 19220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 7201192 - 7201074
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| |||||||||||||    |||||||||| ||||||||   |||||||||||||||||||||||| |||| | ||   ||||||  |||    
T  7201192 aatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttactaaag-acgtgttttttaactt 7201094  T
Q  403 agaaatagaaacatggaaca 422  Q
    ||||||||||||||| ||||    
T  7201093 agaaatagaaacatgaaaca 7201074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 422
Target Start/End: Original strand, 29288423 - 29288550
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaac-acattt 394  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||| || |||||| | | |||| |||||||  | |||||||| ||||||||| |  |||    
T  29288423 aaagatcaatcttctatttaaattgaaaagaacatccgtataataattattagcaaccgaaattaaaattaatatttatttttactaaggaacaagtttt 29288522  T
Q  395 tttcccttagaaatagaaacatggaaca 422  Q
    |||   ||||||||||||||||||||||    
T  29288523 ttttatttagaaatagaaacatggaaca 29288550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 609630 - 609705
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    ||||||||||||  ||||||||||||   ||||||||||| ||||||||| ||| |||||||||||||||| ||||    
T  609630 aatcttctatttatattgaaaataacactcgtataatgattattagccatgaaagtcaaaattagcaattagtttt 609705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 678
Target Start/End: Complemental strand, 1038477 - 1038297
Alignment:
Q  498 aattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacat 597  Q
    |||| ||||||||| ||||||||||| |||||||||   ||| || | || |||||| |||||||| ||||| | ||||| | ||  |  |||||| |||    
T  1038477 aattacttttcacacttcactcaatgctaagaaacatcatgatatcataaatttaacttcaaattccatcaacaattaactaccgtcggataaaattcat 1038378  T
Q  598 cgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 678  Q
    || ||| |||||   ||  | ||||||||| |||||||||  |||||| || ||||||||||||||| || ||||||||||    
T  1038377 cggcagttaactactgaaagagttatattggtaattttgttgtgtttcataacaacctttgatgtgggaacatcaattttc 1038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 10670051 - 10669971
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||| |||||||| ||||||||||||| ||||| ||   ||||||||||||| ||||| |||| ||||    
T  10670051 aatcttctatttaaattaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttactaa 10669971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 581 - 663
Target Start/End: Complemental strand, 34205990 - 34205908
Alignment:
Q  581 cgctgattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtg 663  Q
    ||||||||||||| ||||||||| |||||| |||||  |||||||||||| ||| ||| ||||||  || | |||||||||||    
T  34205990 cgctgattaaaatccatcgacaggtaactgccgatgatgttatattgatattttagtggtgtttcccagtatcctttgatgtg 34205908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 664
Target Start/End: Complemental strand, 33794573 - 33794494
Alignment:
Q  585 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtgg 664  Q
    ||||||||  ||||||||| ||||||  |||| ||||||||| ||| |||  ||||||||| ||||| ||||||||||||    
T  33794573 gattaaaaatcatcgacagttaactgatgatgaggttatattaatattttcctgatgtttcctagcatcctttgatgtgg 33794494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 495 - 678
Target Start/End: Original strand, 33487183 - 33487366
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 594  Q
    ||||||||||||||||| || |||||||| ||||||||||  | |||| |||| |||||| |||||||| |||  |||||||| |||   | |||||||     
T  33487183 gaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattctatcggtagttaactatcagcggttaaaatt 33487282  T
Q  595 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 678  Q
    ||||| ||| |||||| | || |||||||||||||||||| ||| |||||| |||||| |||||||| || || ||||||||||    
T  33487283 catcggcagttaactgcccatagggttatattgataatttcgtggtgtttcatagcaatctttgatgcgggaacatcaattttc 33487366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 422
Target Start/End: Complemental strand, 14802764 - 14802638
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacatttt 395  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| |||||||||||| |||||||||||  ||||||||| |||||    
T  14802764 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattatttttaataaggaacatatttt 14802665  T
Q  396 ttcccttagaaatagaaacatggaaca 422  Q
    ||   ||||| ||||||| ||||||||    
T  14802664 tttaattagatatagaaatatggaaca 14802638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 422
Target Start/End: Complemental strand, 15249757 - 15249631
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacatttt 395  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| |||||||||||| |||||||||||  ||||||||| |||||    
T  15249757 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattatttttaataaggaacatatttt 15249658  T
Q  396 ttcccttagaaatagaaacatggaaca 422  Q
    ||   ||||| ||||||| ||||||||    
T  15249657 tttaattagatatagaaatatggaaca 15249631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 528 - 679
Target Start/End: Complemental strand, 24973048 - 24972897
Alignment:
Q  528 gaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacatcgacagataactgtcgatggggttatattg 627  Q
    |||||||  ||||||||||| ||||||  ||| ||| ||| ||||||||| | ||| | ||||||| ||||| ||| ||||||||||||  |||||||||    
T  24973048 gaaacaccatgaaatgacaaatttaactccaatttccatcgatagttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattg 24972949  T
Q  628 ataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 679  Q
     |||||| |||||||||| |||   |||||||||||| || | |||||||||    
T  24972948 gtaatttcgtgatgtttcctagacccctttgatgtgggaacaacaattttct 24972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 44767334 - 44767450
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||  | | |||||||||||||||||||||||| ||||   |||  ||||||  |||    
T  44767334 aatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttactaa-atacatgttttttaactt 44767432  T
Q  403 agaaatagaaacatggaa 420  Q
    ||||||||||||||||||    
T  44767433 agaaatagaaacatggaa 44767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 38190283 - 38190359
Alignment:
Q  307 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  38190283 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaa 38190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 422
Target Start/End: Original strand, 33540107 - 33540225
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| |||   |||||||||||||||||||||||| |||| | ||   ||||||  |||    
T  33540107 aatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaag-acctgttttttaactt 33540205  T
Q  403 agaaatagaaacatggaaca 422  Q
    |||||| |||||||||||||    
T  33540206 agaaattgaaacatggaaca 33540225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 20183102 - 20183028
Alignment:
Q  605 taactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 679  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||||||| | |||| || |||||||||||    
T  20183102 taactgtcgatggagttatattgataattttgtggtgttttatagcaacctttaacgtgggaacatcaattttct 20183028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 495 - 622
Target Start/End: Complemental strand, 35582372 - 35582244
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaa-ttttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 593  Q
    |||||||||||||| || ||||| | | | ||||||||||| |||||||| || |||||||||||||||| ||   |||||||| | ||| |||||||||    
T  35582372 gaaaattgcttttcccacttcacacgaagctaagaaacactatgaaatgataagttttaacctcaaattctattggtagttaactaccgccgattaaaat 35582273  T
Q  594 acatcgacagataactgtcgatggggtta 622  Q
     || |||||  ||||||||||||| ||||    
T  35582272 tcagcgacaattaactgtcgatggcgtta 35582244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 40230974 - 40230899
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||||||| |||||| ||||||   ||||||||||| |||||||| | |||||||||||| |||||||||||    
T  40230974 aatcttctatttaaattgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattattttt 40230899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 19468337 - 19468416
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||| ||||| ||||||||||||| | ||||||||||| |||||||| | ||||  |||||||||||||||||| ||||    
T  19468337 aatcttttatttaaattgaaaataacattcgtataatgattattagcca-ccaaatataaattagcaattatttttactaa 19468416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 422
Target Start/End: Original strand, 27224296 - 27224412
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| ||  |||||||||   ||||||||||| ||||| || | |||||||||||||||||||||||| || | | |||  ||||||  |||    
T  27224296 aatcttctatttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttactgaag-acatgttttttaactt 27224392  T
Q  403 agaaatagaaacatggaaca 422  Q
    ||||||||||||||| ||||    
T  27224393 agaaatagaaacatgcaaca 27224412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 42082748 - 42082806
Alignment:
Q  504 ttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaatt 562  Q
    |||||||| |||| || ||| ||||||||||  ||||||||||| ||||||||||||||    
T  42082748 ttttcacacttcattcgatgctaagaaacaccatgaaatgacaaatttaacctcaaatt 42082806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 5778 - 5899
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacaca-ttt 394  Q
    |||||||||||||| |||| |||| |||| ||| ||| ||||||||| |||||||| | |||||||||||||||||||||||  | |||||||||| |||    
T  5778 aaagagcaatcttcaatttaaattaaaaacaacatccatataatgattattagccaccgaaatcaaaattagcaattattttgacaaaggaacacatttt 5877  T
Q  395 tttcccttagaaatagaaacat 416  Q
    |||  |||||||||||||||||    
T  5878 ttttacttagaaatagaaacat 5899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 29864675 - 29864768
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaaca 389  Q
    ||||| ||||||||||||| ||||||||||||| || |||||||||| |||||||| |||||| |||||||||||||||||||  |||||||||    
T  29864675 aaagaacaatcttctatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattatttttagtaaggaaca 29864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 50509869 - 50509793
Alignment:
Q  307 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  50509869 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaa 50509793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 9672579 - 9672504
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||||||| |||| ||||||||   ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  9672579 aatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 24892022 - 24892140
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 402  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||| ||||| |||||||| ||||||||||| |||| ||     ||||||  |||    
T  24892022 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaagacgtgcttttttaactt 24892121  T
Q  403 agaaatagaaacatggaac 421  Q
    |||||||||||||||||||    
T  24892122 agaaatagaaacatggaac 24892140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 28190485 - 28190583
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 593  Q
    |||||||||||||| || ||||| ||| |  |||||||||  ||||||||||| ||||||||||||||  |||| |||||||| | ||||| |||||||    
T  28190485 gaaaattgcttttcccacttcacacaaagcaaagaaacaccatgaaatgacaagtttaacctcaaatttcatcagtagttaactaccgctggttaaaat 28190583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 678
Target Start/End: Complemental strand, 37543926 - 37543745
Alignment:
Q  496 aaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatac 595  Q
    ||||||| |||||||| ||||||||||  |||| |||||| | |||||| || |||||||  |||||  ||   |||||||| |  || ||||||| | |    
T  37543926 aaaattgtttttcacacttcactcaatactaaggaacactataaaatgaaaaatttaaccctaaattttattggtagttaactactgccgattaaa-tcc 37543828  T
Q  596 atcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 678  Q
    |||| ||| ||||||| ||||||||| | ||| | |||||||| |||||| |||||||||||||| |  ||| ||||||||||    
T  37543827 atcggcagttaactgttgatggggttgtgttggtgattttgtggtgtttcatagcaacctttgatataaaaacatcaattttc 37543745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 26687705 - 26687785
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| | |||| ||||||| ||||||||||| ||||    
T  26687705 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttactaa 26687785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 50262529 - 50262444
Alignment:
Q  336 taatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttcccttagaaatagaaacatggaaca 422  Q
    ||||||| |||| ||| || |||||||||||||||||||||||| ||||| ||   ||||||  |||||||||||||||||| ||||    
T  50262529 taatgattattaaccaccataatcaaaattagcaattattttttttaagg-acgtgtttttttacttagaaatagaaacatgaaaca 50262444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 23688394 - 23688474
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   |||||||| || ||| | ||  ||||||||||||| ||||||||||| ||||    
T  23688394 aatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttactaa 23688474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 17535770 - 17535863
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaaca 389  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| ||||||||||||||| |||||||| ||||||||||    
T  17535770 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattagcagttatttttactaaggaaca 17535863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 27246300 - 27246224
Alignment:
Q  307 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||| |||||||||||||   ||||||||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  27246300 ttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattacttttactaa 27246224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 11245471 - 11245391
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||||| ||||||||   ||||||||||||||||||| |||| ||||    
T  11245471 aatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttactaa 11245391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 22868123 - 22868043
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    ||||||| |||| ||||||||| |||   ||||||||||| ||||||||   |||||| ||||||||||||||||| ||||    
T  22868123 aatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaa 22868043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 30707119 - 30707048
Alignment:
Q  307 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30707119 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt 30707048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 26290505 - 26290425
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||||| |||| ||||||||||||||||||| ||||    
T  26290505 aatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttactaa 26290425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 2104171 - 2104096
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||||||| |||||||||||||    || ||||||| |||||||| ||||||||||||||||||||||||||    
T  2104171 aatcttctatttaaattgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattattttt 2104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 664
Target Start/End: Complemental strand, 29927883 - 29927711
Alignment:
Q  491 tgaggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaa 590  Q
    ||||||||||||| ||||||| ||||| ||||| ||| ||  ||  |||||||| || ||||||| ||||||  |||   ||||||| ||||  | ||||    
T  29927883 tgaggaaaattgcctttcacacttcacacaatgctaaaaattaccatgaaatgataaatttaaccccaaatttcatcgg-agttaactatcgtcggttaa 29927785  T
Q  591 aatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtgg 664  Q
    ||| ||||  ||| |||||| ||||| |||||||||| |||||| ||| |||||| || |||||||||||||||    
T  29927784 aatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttcctatcaacctttgatgtgg 29927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 5868993 - 5869073
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||| |||||| |||||||| |||||||||| ||||    
T  5868993 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttactaa 5869073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 679
Target Start/End: Complemental strand, 32979063 - 32978969
Alignment:
Q  585 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 679  Q
    ||||||||| ||||| ||| |||||  | ||| | ||||||||||||||||||| |||||| ||||||||| |||||||| || | |||||||||    
T  32979063 gattaaaattcatcggcagttaactaccaatgagtttatattgataattttgtggtgtttcctagcaacctatgatgtgggaacaacaattttct 32978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 612 - 677
Target Start/End: Complemental strand, 3257031 - 3256966
Alignment:
Q  612 cgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaatttt 677  Q
    ||||| |||||| ||| |||||||||| |||||||||||||||||| |||||| |||| |||||||    
T  3257031 cgatgaggttatgttggtaattttgtggtgtttcgtagcaacctttaatgtgggaataacaatttt 3256966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 18242158 - 18242238
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| ||| |||||||||   ||||||||| | |||| ||| |||||| ||||||||||||||||||| ||||    
T  18242158 aatcttctatttaaatcgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttactaa 18242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 619 - 678
Target Start/End: Complemental strand, 37210278 - 37210219
Alignment:
Q  619 gttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 678  Q
    ||||||||| |||||| ||| |||||| |||||||||||||||||| || ||||||||||    
T  37210278 gttatattggtaatttcgtggtgtttcctagcaacctttgatgtgggaacatcaattttc 37210219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 679
Target Start/End: Complemental strand, 35426560 - 35426375
Alignment:
Q  493 aggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaa 592  Q
    ||||||||||||||||||| ||||||||||| |||||||||     ||||||||| ||||||   |||||  ||||| |||||||    |  | ||||||    
T  35426560 aggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcaacagttaactcctgtcggttaaaa 35426461  T
Q  593 tacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 679  Q
    | ||| ||||| ||| || ||||||| ||| |||| |||||| ||| |||||| |||||| |||| | |||| | ||||||||||||    
T  35426460 ttcattgacagttaattgccgatgggtttacattggtaatttcgtggtgtttcatagcaa-cttttacgtgggattatcaattttct 35426375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 44259836 - 44259916
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    ||||||||| || |||||||||| ||   |||||||| || ||||||||   |||||||||||||||||||||||| ||||    
T  44259836 aatcttctagttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttactaa 44259916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 644
Target Start/End: Original strand, 35494924 - 35495030
Alignment:
Q  538 gaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacatcgacagataactgtcgatggggttatattgataattttgt 637  Q
    |||||||||| ||||| ||||||||  ||| ||||||||  | |   | ||||||| ||||| ||| |||||| |||||| |||||||||||||||| ||    
T  35494924 gaaatgacaaatttaatctcaaatttcatcgatagttaattaccatcggttaaaattcatcggcagttaactgccgatggagttatattgataatttcgt 35495023  T
Q  638 gatgttt 644  Q
    | |||||    
T  35495024 ggtgttt 35495030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 421
Target Start/End: Original strand, 16061457 - 16061583
Alignment:
Q  296 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttttt-ctaaggaacacattt 394  Q
    ||||| ||||||||||||| |||||||||||||    |||||||| | |||||||| | ||||||||||||||||||||||||| |||| ||     |||    
T  16061457 aaagatcaatcttctatttaaattgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaagacgtgcttt 16061556  T
Q  395 tttcccttagaaatagaaacatggaac 421  Q
    |||  ||||||||||||||||||||||    
T  16061557 tttaacttagaaatagaaacatggaac 16061583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 6132038 - 6131958
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||||| | |||| |||||||| |||||||||| ||||    
T  6132038 aatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttactaa 6131958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 497 - 657
Target Start/End: Original strand, 53711686 - 53711845
Alignment:
Q  497 aaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaataca 596  Q
    |||||| |||||||| |||||||||   ||||||||||  ||||||||||| |||||||| |||||  ||   |||||||  ||||||| ||||||| ||    
T  53711686 aaattgtttttcacacttcactcaacactaagaaacaca-tgaaatgacaaatttaaccttaaatttcattgttagttaattatcgctggttaaaattca 53711784  T
Q  597 tcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaaccttt 657  Q
    || |||| |||||| | ||| | |||| ||| ||| |||||| |||||| |||||||||||    
T  53711785 tcaacagttaactgcccatgagattatgttggtaaatttgtggtgtttcatagcaaccttt 53711845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 495 - 662
Target Start/End: Complemental strand, 47533889 - 47533722
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 594  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||  | |||||| || ||||||||||||||  |||  | |||||| | |||   | |||||     
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatttcatcggtcgttaactaccgccagtcaaaatt 47533790  T
Q  595 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgt 662  Q
    ||||| |||  |||||||||||  ||||||||| ||| |||||| |||||| || |||||||| ||||    
T  47533789 catcggcagtcaactgtcgatgaagttatattggtaaatttgtggtgtttcctaacaacctttaatgt 47533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 29010174 - 29010105
Alignment:
Q  494 ggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 563  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | ||||||||| |||||||||||||||    
T  29010174 ggaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaacctcaaattc 29010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 6087060 - 6087140
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||| ||||| |||||||||||||   ||||||||| | |||||||| | |||| ||||||||||||||||||| ||||    
T  6087060 aatcttatatttaaattgaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttactaa 6087140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 6166462 - 6166386
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttttt 379  Q
    |||||||||||| |||| ||||||||   ||||||||||| |||||||| | ||||||||||||  |||||||||||    
T  6166462 aatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaattatttttt 6166386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 32727986 - 32728066
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   | ||||||| | |||||||| |||||| ||||||| ||||||||||| ||||    
T  32727986 aatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttactaa 32728066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 18886254 - 18886184
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaatta 373  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| | |||| ||||||||||||||    
T  18886254 aatcttctatttaaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 22579232 - 22579328
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaa 591  Q
    ||||||| ||||||| | ||||||||||| ||| ||||||| | |||||  || ||||||||||||||| ||||| ||| ||| | ||||| |||||    
T  22579232 gaaaattacttttcatacttcactcaatgctaaaaaacactataaaatggtaaatttaacctcaaattctatcaacagtgaactaccgctggttaaa 22579328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 24894818 - 24894750
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 563  Q
    |||||||| ||||| || ||||| ||||| |||||||||| || |||| |||| |||||||||||||||    
T  24894818 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 24894750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 678
Target Start/End: Complemental strand, 24894721 - 24894662
Alignment:
Q  619 gttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 678  Q
    ||||||||| |||||||||| |||||| |  ||||||||||||||| || ||||||||||    
T  24894721 gttatattggtaattttgtggtgtttcattacaacctttgatgtgggaacatcaattttc 24894662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 36441099 - 36441173
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||||||| || ||||||||||   |||||||| || ||||||||   ||||||||||||||||||||||||    
T  36441099 aatcttctatttaaactgaaaataacactcgtataattat-attagccactgaaatcaaaattagcaattattttt 36441173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 496 - 622
Target Start/End: Original strand, 55520939 - 55521065
Alignment:
Q  496 aaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatac 595  Q
    ||||||| ||||| || ||||| ||| | ||||||||||  ||||||||||| |||| || ||||||  ||||||||||||  | |||   ||||||| |    
T  55520939 aaaattgtttttcccacttcacacaaagctaagaaacaccatgaaatgacaagtttagccccaaattacatcaatagttaaataccgcaagttaaaattc 55521038  T
Q  596 atcgacagataactgtcgatggggtta 622  Q
    |||| ||| ||||| ||| ||||||||    
T  55521039 atcggcagttaactttcgttggggtta 55521065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 38138839 - 38138766
Alignment:
Q  310 tatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    ||||| |||||||||||||   ||||||||||| |||| ||  |||||||||||| | ||||||||||| ||||    
T  38138839 tatttaaattgaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaa 38138766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 54561188 - 54561108
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 383  Q
    |||||||||||| |||||||||||||   | ||||||||| |||||| | ||||||||||||||||||||| |||| ||||    
T  54561188 aatcttctatttaaattgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttactaa 54561108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 1699932 - 1700000
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 563  Q
    ||||||||  ||||||| ||||| ||||| ||||||||||  |||||| |||| |||||||||||||||    
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattc 1700000  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 610
Target Start/End: Complemental strand, 40362140 - 40362025
Alignment:
Q  495 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 594  Q
    ||||||||| ||||||||||||  ||||| ||||||||||  | |||||| || ||||||| ||||||  ||  ||||||||| | ||  | |||||||     
T  40362140 gaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatc 40362041  T
Q  595 catcgacagataactg 610  Q
    ||||||||| ||||||    
T  40362040 catcgacagttaactg 40362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 42624843 - 42624768
Alignment:
Q  303 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 378  Q
    |||||||||||| |||||| | ||||   ||||||||| | |||||||| | |||| |||||||||||||||||||    
T  42624843 aatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattattttt 42624768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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