View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_30 (Length: 454)

Name: NF0740_low_30
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_30
NF0740_low_30
[»] chr6 (2 HSPs)
chr6 (28-444)||(9825058-9825474)
chr6 (159-389)||(9819505-9819727)
[»] chr3 (13 HSPs)
chr3 (256-303)||(1890829-1890876)
chr3 (270-307)||(783590-783627)
chr3 (261-302)||(12218279-12218320)
chr3 (269-305)||(43992209-43992245)
chr3 (256-303)||(1889363-1889410)
chr3 (256-303)||(1897442-1897489)
chr3 (256-303)||(1906888-1906935)
chr3 (250-297)||(7427352-7427399)
chr3 (268-307)||(13526843-13526882)
chr3 (270-307)||(1438232-1438269)
chr3 (48-128)||(45451562-45451642)
chr3 (262-302)||(1930946-1930986)
chr3 (271-303)||(2932151-2932183)
[»] chr5 (4 HSPs)
chr5 (261-308)||(23769422-23769469)
chr5 (261-308)||(23819270-23819317)
chr5 (261-303)||(23644660-23644702)
chr5 (48-91)||(18607103-18607147)
[»] chr1 (1 HSPs)
chr1 (249-308)||(51377907-51377966)
[»] scaffold0044 (1 HSPs)
scaffold0044 (261-307)||(89390-89436)
[»] chr2 (1 HSPs)
chr2 (104-132)||(19980740-19980768)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Original strand, 9825058 - 9825474
Alignment:
Q  28 cagacacgacaaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacac 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9825058 cagacacgacaaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgcgacac 9825157  T
Q  128 acctagttgaccgagtgtccttgcttcacaggttaccattgattagaaaaaatacataacatacacagcatgaactgcagtttgacattaagttgcagtt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9825158 acctagttgaccgagtgtccttgcttcacaggttaccattgattagaaaaaatacataacacacacagcatgaactgcagtttgacattaagttgcagtt 9825257  T
Q  228 gaatataatgcacagatggtataacaaaacatgtacatactaacattaagaacaaggcgatatcaaactctcaacgtagatcgagagcctcccattgcca 327  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9825258 gaatataatgcacagatggtataacaaaatatgtacatactaacattaagaacaaggcgatatcaaactctcaacatagatcgagagcctcccattgcca 9825357  T
Q  328 ttggtcttaatatcaagactcttcaaagtatcatttgtggaatcgtaaaccaccaacctcgacctggacaagtgcattataatctccagcagcacttcat 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  9825358 ttggtcttaatatcaagactcttcaaagtatcatttgtggaatcgtaaaccatcaacttcgacctggacaagtgcattataatctccagcagcacttcat 9825457  T
Q  428 catcctcagtagtataa 444  Q
    |||||||||||||||||    
T  9825458 catcctcagtagtataa 9825474  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 159 - 389
Target Start/End: Original strand, 9819505 - 9819727
Alignment:
Q  159 gttaccattgattagaaaaaatacataacatacacagcatgaactgcagtttgacattaagttgcagttgaatataatgcacagatggtataacaaaaca 258  Q
    |||||||||||| || |||||  ||||| ||||||||||||||| | |||||||||| | ||||||||||||||||| ||||| |||||||| |||||||    
T  9819505 gttaccattgatcaggaaaaa--cataatatacacagcatgaaccgaagtttgacatgatgttgcagttgaatataaagcacaaatggtatagcaaaaca 9819602  T
Q  259 tgtacatactaacattaagaacaaggcgatatcaaactctcaacgtagatcgagagcctcccattgccattggtcttaatatcaagactcttcaaagtat 358  Q
     ||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||      | || | |||||||||| ||||||||||||||||    
T  9819603 agtacatactaacattaagaacaaggtgatatcaaactctcaacgtaaatcaacagcctc------caatggatcttaatatctagactcttcaaagtat 9819696  T
Q  359 catttgtggaatcgtaaaccaccaacctcga 389  Q
    ||||| ||||||||||||||| |||| ||||    
T  9819697 catttatggaatcgtaaaccatcaacttcga 9819727  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 1890829 - 1890876
Alignment:
Q  256 acatgtacatactaacattaagaacaaggcgatatcaaactctcaacg 303  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  1890829 acatctacattctagcattaagaacaaggcgatatcaaactctcaacg 1890876  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 783590 - 783627
Alignment:
Q  270 acattaagaacaaggcgatatcaaactctcaacgtaga 307  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  783590 acattaagaacaaggtgatatcaaactctcaacgtaga 783627  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 12218320 - 12218279
Alignment:
Q  261 tacatactaacattaagaacaaggcgatatcaaactctcaac 302  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  12218320 tacatcctaacattaagaacaaggtgatatcaaactctcaac 12218279  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 43992245 - 43992209
Alignment:
Q  269 aacattaagaacaaggcgatatcaaactctcaacgta 305  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43992245 aacattaagaacaaggtgatatcaaactctcaacgta 43992209  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 1889363 - 1889410
Alignment:
Q  256 acatgtacatactaacattaagaacaaggcgatatcaaactctcaacg 303  Q
    |||| ||||| ||| |||||||||||||| ||||||||||||||||||    
T  1889363 acatctacattctagcattaagaacaaggtgatatcaaactctcaacg 1889410  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 1897442 - 1897489
Alignment:
Q  256 acatgtacatactaacattaagaacaaggcgatatcaaactctcaacg 303  Q
    |||| ||||| ||| |||||||||||||| ||||||||||||||||||    
T  1897442 acatttacattctagcattaagaacaaggtgatatcaaactctcaacg 1897489  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 1906888 - 1906935
Alignment:
Q  256 acatgtacatactaacattaagaacaaggcgatatcaaactctcaacg 303  Q
    |||| ||||| ||| |||||||||||||| ||||||||||||||||||    
T  1906888 acatttacattctagcattaagaacaaggtgatatcaaactctcaacg 1906935  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 7427352 - 7427399
Alignment:
Q  250 aacaaaacatgtacatactaacattaagaacaaggcgatatcaaactc 297  Q
    ||||||| || ||||| |||||||||||||||||| ||||||||||||    
T  7427352 aacaaaaaatctacatcctaacattaagaacaaggtgatatcaaactc 7427399  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 13526882 - 13526843
Alignment:
Q  268 taacattaagaacaaggcgatatcaaactctcaacgtaga 307  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  13526882 taacgttaagaacaaggtgatatcaaactctcaacgtaga 13526843  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 1438269 - 1438232
Alignment:
Q  270 acattaagaacaaggcgatatcaaactctcaacgtaga 307  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  1438269 acattaaaaacaaggtgatatcaaactctcaacgtaga 1438232  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 45451562 - 45451642
Alignment:
Q  48 aataatttaagaaaataacatacttaa-tgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacaca 128  Q
    |||||||| ||||||| |||||||| | | |||| ||| |||||||| | |||||| ||||||||||||||| |||||||||    
T  45451562 aataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacac-gacacatgtccgacaccgagacaca 45451642  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 1930946 - 1930986
Alignment:
Q  262 acatactaacattaagaacaaggcgatatcaaactctcaac 302  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  1930946 acattctagcattaagaacaaggtgatatcaaactctcaac 1930986  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 2932183 - 2932151
Alignment:
Q  271 cattaagaacaaggcgatatcaaactctcaacg 303  Q
    |||||||||||||| ||||||||||||||||||    
T  2932183 cattaagaacaaggtgatatcaaactctcaacg 2932151  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 23769422 - 23769469
Alignment:
Q  261 tacatactaacattaagaacaaggcgatatcaaactctcaacgtagat 308  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| ||||    
T  23769422 tacattctaacattaagaacaaggtgatatcaaactttcaacgcagat 23769469  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 23819270 - 23819317
Alignment:
Q  261 tacatactaacattaagaacaaggcgatatcaaactctcaacgtagat 308  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| ||||    
T  23819270 tacattctaacattaagaacaaggtgatatcaaactttcaacgcagat 23819317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 23644702 - 23644660
Alignment:
Q  261 tacatactaacattaagaacaaggcgatatcaaactctcaacg 303  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||    
T  23644702 tacattctaacattaagaacaaggtgatatcaaactttcaacg 23644660  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 18607147 - 18607103
Alignment:
Q  48 aataatttaagaaaataacatactt-aatgtaatcataggtgtcg 91  Q
    |||||||| ||||||||||||| || |||||||||||||||||||    
T  18607147 aataatttgagaaaataacataattcaatgtaatcataggtgtcg 18607103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 51377907 - 51377966
Alignment:
Q  249 taacaaaacatgtacatactaacattaagaacaaggcgatatcaaactctcaacgtagat 308  Q
    ||||||||||| ||||| |||| ||| |||| |||| || ||||||||||||||||||||    
T  51377907 taacaaaacatctacatcctaatattgagaaaaaggtgagatcaaactctcaacgtagat 51377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 89436 - 89390
Alignment:
Q  261 tacatactaacattaagaacaaggcgatatcaaactctcaacgtaga 307  Q
    ||||| ||||| |||||||||||| |||||||||||||||| |||||    
T  89436 tacatcctaacgttaagaacaaggtgatatcaaactctcaatgtaga 89390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 19980740 - 19980768
Alignment:
Q  104 gacacatgtccgacatcgagacacaccta 132  Q
    |||||||||||||||||||||||||||||    
T  19980740 gacacatgtccgacatcgagacacaccta 19980768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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