View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_31 (Length: 453)
Name: NF0740_low_31
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_31 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 117 - 439
Target Start/End: Complemental strand, 10609 - 10287
Alignment:
| Q |
117 |
ttaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggaagaagcatatacacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10609 |
ttaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggatgaagcatatacacc |
10510 |
T |
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| Q |
217 |
tctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10509 |
tctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgt |
10410 |
T |
|
| Q |
317 |
ttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10409 |
ttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagca |
10310 |
T |
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| Q |
417 |
atgaacaaatggttgatatgata |
439 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10309 |
atgaacaaatggttgatatgata |
10287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 117 - 439
Target Start/End: Complemental strand, 24063 - 23741
Alignment:
| Q |
117 |
ttaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggaagaagcatatacacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24063 |
ttaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggatgaagcatatacacc |
23964 |
T |
|
| Q |
217 |
tctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963 |
tctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgt |
23864 |
T |
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| Q |
317 |
ttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23863 |
ttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagca |
23764 |
T |
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| Q |
417 |
atgaacaaatggttgatatgata |
439 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
23763 |
atgaacaaatggttgatatgata |
23741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 116 - 439
Target Start/End: Complemental strand, 116215 - 115895
Alignment:
| Q |
116 |
attaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggaagaagcatatacac |
215 |
Q |
| |
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||||||||| | || | ||| |||||||| | |||||||||||| || || ||||| ||||| ||||| | ||||| ||||| || || || ||||||| |
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| T |
116215 |
attaacatcccagacaatattgagccttcccattggcctcaatgttgtatctacaaagttccagctactcttttgaatgtgaaagaggaggcttatacac |
116116 |
T |
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| Q |
216 |
ctctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcg |
315 |
Q |
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|||| | ||||| ||||| |||||||||||||||||| | || |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |
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| T |
116115 |
ctctaatcatatctattggacctatccaccataacaacga---aagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcg |
116019 |
T |
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| Q |
316 |
tttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagc |
415 |
Q |
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| |||| |||| |||||| ||||||||||||| || |||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| | |
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| T |
116018 |
cctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaac |
115919 |
T |
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| Q |
416 |
aatgaacaaatggttgatatgata |
439 |
Q |
| |
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| ||| ||| ||||||| |||||| |
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| T |
115918 |
agtgagcaattggttgacatgata |
115895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 119 - 447
Target Start/End: Original strand, 177575 - 177900
Alignment:
| Q |
119 |
aacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggaagaagcatatacacctc |
218 |
Q |
| |
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|||||| | ||||||||||||||| || |||||||||||| || || ||||| ||| |||||| | | ||||| | ||| ||||| ||||||||||||| |
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| T |
177575 |
aacatcccagaaattatagagcctgcaacttggcctcaatgttgtatctacaatgttactactattcttttgaatgggaaagaagaggcatatacacctc |
177674 |
T |
|
| Q |
219 |
tgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgttt |
318 |
Q |
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|||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||| || |||||||||| ||| |||||||| | |
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| T |
177675 |
tgctcatatcaattggacctatccaccat---aacaacaaaaaacttgaggaaatgcaagagcataaacaaagatattttcattttttttggaatcgcat |
177771 |
T |
|
| Q |
319 |
ggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaat |
418 |
Q |
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|| ||||||||||| || |||||||||| || || |||||||||| | ||||| |||| ||||||||||||||||| |||||||||| || |
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| T |
177772 |
agaagaaaaaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccat |
177871 |
T |
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| Q |
419 |
gaacaaatggttgatatgatattcttgga |
447 |
Q |
| |
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|||||| | ||||| |||||||| ||||| |
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| T |
177872 |
gaacaatttgttgacatgatattgttgga |
177900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 116 - 393
Target Start/End: Original strand, 606262 - 606536
Alignment:
| Q |
116 |
attaacatctctgaaattatagagccttcactttggcctcaatgctgcatatacaaggttcctactactttgttgaaggtgaaggaagaagcatatacac |
215 |
Q |
| |
|
||||||||| |||||| |||||||||| | |||||||||||||| || || |||||||||||||||||| | ||||| ||||||||||||| ||||||| |
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|
| T |
606262 |
attaacatccctgaaaatatagagcctcccctttggcctcaatgttgtatctacaaggttcctactactcttttgaatgtgaaggaagaagattatacac |
606361 |
T |
|
| Q |
216 |
ctctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcg |
315 |
Q |
| |
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|||| || ||||| ||||| |||||||||||| | |||||||| || |||||| ||||||||| ||||||| || |||||||||| || |||||||| |
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| T |
606362 |
ctctactcatatcaattggacctatccaccat---agcaacaaaacacatgaggatatgcaagaacacaaacagagatattttcatttcttttggaatcg |
606458 |
T |
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| Q |
316 |
tttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttacca |
393 |
Q |
| |
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| ||| |||| |||||| |||||||||||| || ||| |||||||||| || ||||| |||| |||||||| |
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| T |
606459 |
cctagaccaaaaaagtgatttaatgaactacaaaactttccttgaacaagaagaacataatattcgccactgttacca |
606536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 37438606 - 37438542
Alignment:
| Q |
360 |
aacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaa |
424 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
37438606 |
aacaagaagagcaaaatatacgccgatgttaccaaaagaaattctcaaatatcagcaataaacaa |
37438542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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