View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_32 (Length: 449)
Name: NF0740_low_32
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_32 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 28 - 449
Target Start/End: Original strand, 33387728 - 33388149
Alignment:
| Q |
28 |
caatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagca |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387728 |
caatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagca |
33387827 |
T |
|
| Q |
128 |
ttgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaac |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387828 |
ttgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaac |
33387927 |
T |
|
| Q |
228 |
attatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387928 |
attatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagt |
33388027 |
T |
|
| Q |
328 |
gtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgatacca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33388028 |
gtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgctacca |
33388127 |
T |
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| Q |
428 |
tcgcagatattgaaagaatctc |
449 |
Q |
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| T |
33388128 |
tcgcagaaattgaaagaatctc |
33388149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 28 - 449
Target Start/End: Complemental strand, 20817379 - 20816955
Alignment:
| Q |
28 |
caatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaagtatcctgcta |
124 |
Q |
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||||||||||||||||| | ||| ||| || ||||| |||||||||||| ||||| || ||| ||| |||||||||||||||||| |||||||||| |
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| T |
20817379 |
caatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgcta |
20817280 |
T |
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| Q |
125 |
gcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcg |
224 |
Q |
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|||||| |||| | |||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
20817279 |
gcattgtctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcg |
20817180 |
T |
|
| Q |
225 |
aacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaat |
324 |
Q |
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|||||||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |
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| T |
20817179 |
aacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacattcaag |
20817080 |
T |
|
| Q |
325 |
agtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgata |
424 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||| || | |
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| T |
20817079 |
agtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtactgaca |
20816980 |
T |
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| Q |
425 |
ccatcgcagatattgaaagaatctc |
449 |
Q |
| |
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||||||||| ||||| |||||||| |
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| T |
20816979 |
gcatcgcagaaattgacagaatctc |
20816955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 54 - 290
Target Start/End: Original strand, 38778277 - 38778513
Alignment:
| Q |
54 |
ctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtag |
153 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||| |
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| T |
38778277 |
ctggttgtctttaactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgtagtag |
38778376 |
T |
|
| Q |
154 |
tcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgt |
253 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
38778377 |
tcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgccctat |
38778476 |
T |
|
| Q |
254 |
gattaacaaagttttcatagcaccaagatggatcctc |
290 |
Q |
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|||||| ||||| || ||||||||||| | |||||| |
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| T |
38778477 |
tattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 293 - 419
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
293 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
392 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
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| Q |
393 |
cctaggccgaataaagcaattgggtac |
419 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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