View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_34 (Length: 438)
Name: NF0740_low_34
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 93 - 423
Target Start/End: Original strand, 325568 - 325898
Alignment:
| Q |
93 |
tgagttggttaccactttcttaaggtttaattacaattccgttaagagtttgtaatatttattaggtaagagtaaagggattagtgtattgaatcgagtg |
192 |
Q |
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| T |
325568 |
tgagttggttaccactttcttaaggtttaattataattccgttaagagtttgtaatatttattaggtaagagtaaagggattagtgtattgaatcgagtg |
325667 |
T |
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| Q |
193 |
aatcaatactttagttattgaagttgtcgaggtctgagaatttgatcacccaaacttatgaactgataaattgagctatgaaattaaaggtagtcactca |
292 |
Q |
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| T |
325668 |
aatcaatactttagttattgaagttgtcgaggtctgagaatttgatcacccaaacttatgaaatgataaattgagatatgaaattaaaggtagtcactca |
325767 |
T |
|
| Q |
293 |
atttagccaatctgttatctaacagagtttgaattgttgagtttgcacatatttagggcatggttatgagtagtatgttttcattaatctgttaggttat |
392 |
Q |
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| T |
325768 |
atttagccaatctgttatctaacagagtttgaattgttgagcttgcacgtatttagggcatggttatgagtagtatgttttcattaatctgttaggttat |
325867 |
T |
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| Q |
393 |
atgttatttaggttaatctgttaggttatat |
423 |
Q |
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| T |
325868 |
atgttatttaggttaatctgttaggttatat |
325898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 324124 - 324268
Alignment:
| Q |
175 |
agtgtattgaatcgagtgaatcaatactttagttattgaagttgtcgaggtctgaga--atttgatcacccaaacttatgaactgataaattgagctatg |
272 |
Q |
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|||| ||| ||| |||||| |||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
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| T |
324124 |
agtgcattcaatagagtgagtcaatattttagttcttgaaattgtagaggtctgagagaatttgatcacccaaatttatgaacagataaattgagctatg |
324223 |
T |
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| Q |
273 |
aaattaaaggtagtcactcaatttagccaatctgttatctaacag |
317 |
Q |
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| T |
324224 |
aaattaaaagctgtgaatcaatttaaccaatcttttatttaacag |
324268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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