View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_36 (Length: 429)
Name: NF0740_low_36
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 95 - 426
Target Start/End: Original strand, 8285431 - 8285762
Alignment:
| Q |
95 |
aaaaatatatcaatttttacatataatgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatat |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285431 |
aaaaatatatcaatttttacatatattgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatat |
8285530 |
T |
|
| Q |
195 |
cccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatt |
294 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
8285531 |
cccttagacgtgtgcaatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgtgtgtttgtcaggatt |
8285630 |
T |
|
| Q |
295 |
tggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatgtggggccctttaacgttcgtgcatcctttggagat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8285631 |
tggtgtggaagatgaagcggaaaaatgtatggtgattactaaggacgccgcattcaaggttgatgcagggccctttaacgttcgtgcatcctttggagat |
8285730 |
T |
|
| Q |
395 |
agagcagttctctttgactcctttgctactcc |
426 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |
|
|
| T |
8285731 |
agagcagttctctttgactcctctggtactcc |
8285762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 151 - 416
Target Start/End: Original strand, 34697227 - 34697492
Alignment:
| Q |
151 |
cacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaag |
250 |
Q |
| |
|
|||||| |||||||||||| ||||||| || ||| || ||||| | | |||||||||||||| |||| |||||||| ||||| ||||||| || | || |
|
|
| T |
34697227 |
cacccagaatttaaagcacggggtatggttatgttctataatatctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgag |
34697326 |
T |
|
| Q |
251 |
ttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattca |
350 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||| ||||| ||| ||| ||| ||| | | |||||||| | ||||||||| |||| |||||| |
|
|
| T |
34697327 |
ttgcatatgactcataaattgttgtatgtgtgtttctcaggttttagtgaggacaatgttactgcaaaatgtagggtgattactatcgacggtgcattcg |
34697426 |
T |
|
| Q |
351 |
aggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
416 |
Q |
| |
|
| ||| ||||||||||||||||||||||| || |||||| ||| |||||||||| ||||||||| |
|
|
| T |
34697427 |
aagttaatgtggggccctttaacgttcgtaaattctttggcgatggagcagttctgcttgactcct |
34697492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 34687526 - 34687581
Alignment:
| Q |
362 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctt |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
34687526 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactcctt |
34687581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 419
Target Start/End: Original strand, 24968890 - 24969058
Alignment:
| Q |
249 |
agttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcatt |
348 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| || | || ||||||| | |||| ||| |
|
|
| T |
24968890 |
agttgcatattacagatgaattgttg--tgtgtgtttgtcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtatt |
24968987 |
T |
|
| Q |
349 |
caaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctttg |
419 |
Q |
| |
|
| ||||| ||| ||| ||||||||||||||| || ||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
24968988 |
cgaggttcatgcagggtcctttaacgttcgtgaattgtttggtgatgaagcagttctatttgactcctttg |
24969058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4303 times since January 2019
Visitors: 4832