View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_37 (Length: 428)
Name: NF0740_low_37
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 82 - 332
Target Start/End: Complemental strand, 41890682 - 41890432
Alignment:
| Q |
82 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
181 |
Q |
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| T |
41890682 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
41890583 |
T |
|
| Q |
182 |
cctctctattcttatgtcaaattgtcaatttaagatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagcttcctagcataa |
281 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890582 |
cctctctattcttatgtcaaattgtcaatttaaaatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagcttcctagcataa |
41890483 |
T |
|
| Q |
282 |
tgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatca |
332 |
Q |
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| T |
41890482 |
tgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatca |
41890432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 82 - 332
Target Start/End: Complemental strand, 41896294 - 41896034
Alignment:
| Q |
82 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
181 |
Q |
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| T |
41896294 |
attattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccacgtcatattttgtaaggcactcttgt |
41896195 |
T |
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| Q |
182 |
cc--------tctctattcttatgtcaaattgtcaa--tttaagatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagctt |
271 |
Q |
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| T |
41896194 |
cctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagctt |
41896095 |
T |
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| Q |
272 |
cctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatca |
332 |
Q |
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| T |
41896094 |
cctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatca |
41896034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 22551910 - 22551974
Alignment:
| Q |
107 |
ttctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
171 |
Q |
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| T |
22551910 |
ttctttggcgatcttcttggcttctttggtggatttggttttgctcccacttcatattttgtaag |
22551974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 22552070 - 22552142
Alignment:
| Q |
258 |
aattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcat |
330 |
Q |
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| T |
22552070 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcat |
22552142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 43855185 - 43855252
Alignment:
| Q |
104 |
ccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
171 |
Q |
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||||||||||||| ||| |||||||| ||||| ||||| | ||||||||||| ||||||||||||| |
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| T |
43855185 |
ccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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