View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_38 (Length: 426)

Name: NF0740_low_38
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_38
NF0740_low_38
[»] chr5 (25 HSPs)
chr5 (168-410)||(8644711-8644953)
chr5 (84-167)||(8645043-8645126)
chr5 (83-167)||(8637698-8637782)
chr5 (168-279)||(8536113-8536224)
chr5 (168-288)||(8678439-8678559)
chr5 (334-377)||(8536027-8536070)
chr5 (168-287)||(8637489-8637608)
chr5 (336-377)||(8637399-8637440)
chr5 (334-406)||(2856424-2856496)
chr5 (334-374)||(8529466-8529506)
chr5 (341-377)||(11354043-11354079)
chr5 (341-377)||(11373314-11373350)
chr5 (334-377)||(1599837-1599880)
chr5 (334-377)||(2844597-2844640)
chr5 (334-377)||(2904540-2904583)
chr5 (179-292)||(1599694-1599807)
chr5 (169-209)||(2844435-2844475)
chr5 (169-209)||(2856268-2856308)
chr5 (169-209)||(2873878-2873918)
chr5 (334-406)||(2874034-2874106)
chr5 (169-209)||(2904384-2904424)
chr5 (84-114)||(8678640-8678670)
chr5 (336-374)||(9074277-9074315)
chr5 (172-209)||(11353889-11353926)
chr5 (177-209)||(9004161-9004193)
[»] chr7 (4 HSPs)
chr7 (334-377)||(35780339-35780382)
chr7 (168-291)||(48361235-48361358)
chr7 (334-377)||(48361389-48361432)
chr7 (179-295)||(35780424-35780541)
[»] chr4 (1 HSPs)
chr4 (334-374)||(9443627-9443667)
[»] chr6 (1 HSPs)
chr6 (334-387)||(16716886-16716939)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 168 - 410
Target Start/End: Complemental strand, 8644953 - 8644711
Alignment:
Q  168 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644953 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 8644854  T
Q  268 ataagacttcctaaagctactgcgactcttatccacaatgacatagtggataaggtatcaggtattgctggttttggcttccaacctaaaactaatgaat 367  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8644853 ataagacttcctaaagctactgcgaatcttatccacaatgacatagtggataaggtatcaggtattgctgcttttggcttccaacctaaaactaatgaat 8644754  T
Q  368 ataaggtgatgtatatttgggacagatatgttagacgaggcaa 410  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  8644753 ataaggtgatgtatatttgggacaaatatgttagacgaggcaa 8644711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 8645126 - 8645043
Alignment:
Q  84 aagcttgcgcctatatttaagcttcctcttcataatgccaactcatataaggagaaaatcgagaataaacccaagtgccctatt 167  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8645126 aagcttgcacctatatttaagcttcctcttcgtaatgccaactcatataaggagaaaatcgagaataaacccaagtgccctatt 8645043  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 8637782 - 8637698
Alignment:
Q  83 gaagcttgcgcctatatttaagcttcctcttcataatgccaactcatataaggagaaaatcgagaataaacccaagtgccctatt 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  8637782 gaagcttgcgcctatatttaagcttcctcttcgtaatgccaactcatatagggagaaaatcgagaataaacccaagcgccctatt 8637698  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 8536224 - 8536113
Alignment:
Q  168 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 267  Q
    |||||||| | ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| ||||||||||||||||||    
T  8536224 taagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcactggggagttt 8536125  T
Q  268 ataagacttcct 279  Q
    ||||||||||||    
T  8536124 ataagacttcct 8536113  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 8678559 - 8678439
Alignment:
Q  168 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 267  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||   |||||||| |||   || ||| | ||||| || ||| | ||||| ||||||    
T  8678559 taagtttggtgttgcgaattcttgcaatggcatgctttgtttgtgttgcccatttgagggacaccctttattgatttgtaacccacttactggcgagttt 8678460  T
Q  268 ataagacttcctaaagctact 288  Q
    |||||||||| | ||||||||    
T  8678459 ataagacttcatgaagctact 8678439  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 8536070 - 8536027
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  8536070 gctggttttggtttccaacctaaaactaatgaatataaggtgat 8536027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 8637608 - 8637489
Alignment:
Q  168 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 267  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||   |||| ||| | |   || |||   |||||||| || |||||||||||||||    
T  8637608 taagtttggtgttgcgaattcttgcaatggcttgctttgtttgtgttgcccatctgacgaacaccctttatcgatttgcaacccggtcactggggagttt 8637509  T
Q  268 ataagacttcctaaagctac 287  Q
    || | ||||||| |||||||    
T  8637508 attaaacttcctgaagctac 8637489  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 8637440 - 8637399
Alignment:
Q  336 tggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  8637440 tggttttggtttccaacctaaaactaatgaatataaggtgat 8637399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 2856424 - 2856496
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgag 406  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    || ||| ||| ||||||||||||||    
T  2856424 gctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgag 2856496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 8529506 - 8529466
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggt 374  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  8529506 gctggttttggattccaacctaaaactaatgaatataaggt 8529466  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 11354043 - 11354079
Alignment:
Q  341 ttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    |||||||||||||||||||||||||||||||||||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgat 11354079  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 11373350 - 11373314
Alignment:
Q  341 ttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    |||||||||||||||||||||||||||||||||||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgat 11373314  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 1599837 - 1599880
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  1599837 gctgcttttggtttccaacctaaaactaatgaatataaggtgat 1599880  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 2844597 - 2844640
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  2844597 gctggttttggtttccaacccaaaactaatgaatataaggtgat 2844640  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 2904540 - 2904583
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  2904540 gctggttttggtttccaacccaaaactaatgaatataaggtgat 2904583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 292
Target Start/End: Original strand, 1599694 - 1599807
Alignment:
Q  179 ttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttataagacttcc 278  Q
    ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| ||| ||||||||||||| |||||||||||    
T  1599694 ttgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactggggagttcataagacttcc 1599793  T
Q  279 taaagctactgcga 292  Q
    | || |||| ||||    
T  1599794 tgaatctaccgcga 1599807  T

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Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 2844435 - 2844475
Alignment:
Q  169 aagtttggtgttgtgaattcttgcaatggcttgctttgttt 209  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  2844435 aagtttggcattgtgaattcttgcaatggcttgctttgttt 2844475  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 2856268 - 2856308
Alignment:
Q  169 aagtttggtgttgtgaattcttgcaatggcttgctttgttt 209  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  2856268 aagtttggcattgtgaattcttgcaatggcttgctttgttt 2856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 2873878 - 2873918
Alignment:
Q  169 aagtttggtgttgtgaattcttgcaatggcttgctttgttt 209  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  2873878 aagtttggcattgtgaattcttgcaatggcttgctttgttt 2873918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 2874034 - 2874106
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgag 406  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    || ||| ||| ||||||||||||||    
T  2874034 gctggttttagtttccaacccaaaactaatgaatataaggtgatcataatatggaacaaatatgttagacgag 2874106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 2904384 - 2904424
Alignment:
Q  169 aagtttggtgttgtgaattcttgcaatggcttgctttgttt 209  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  2904384 aagtttggcattgtgaattcttgcaatggcttgctttgttt 2904424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 8678670 - 8678640
Alignment:
Q  84 aagcttgcgcctatatttaagcttcctcttc 114  Q
    |||||||||||||||||||||||||||||||    
T  8678670 aagcttgcgcctatatttaagcttcctcttc 8678640  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 9074277 - 9074315
Alignment:
Q  336 tggttttggcttccaacctaaaactaatgaatataaggt 374  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  9074277 tggttttggattccaacctaatactaatgaatataaggt 9074315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 11353889 - 11353926
Alignment:
Q  172 tttggtgttgtgaattcttgcaatggcttgctttgttt 209  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  11353889 tttggtgtggtgaattcctgcaatggcttgctttgttt 11353926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 9004193 - 9004161
Alignment:
Q  177 tgttgtgaattcttgcaatggcttgctttgttt 209  Q
    |||||||||||| ||||||||||||||||||||    
T  9004193 tgttgtgaattcatgcaatggcttgctttgttt 9004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 35780382 - 35780339
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  35780382 gctggttttggtttccaacctaaaactaatgaatataaggtgat 35780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 48361235 - 48361358
Alignment:
Q  168 taagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttt 267  Q
    |||||||| | ||||||||||||||||||| || |||||||||  | |||||| |   ||||  || ||||| || ||||| |||||||| ||||||||     
T  48361235 taagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtcacaggggagttc 48361334  T
Q  268 ataagacttcctaaagctactgcg 291  Q
    |||||||||||| || ||||||||    
T  48361335 ataagacttcctgaatctactgcg 48361358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 48361389 - 48361432
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgat 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  48361389 gctggttttggtttccaacctaaaactaatgaatataaggtgat 48361432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 35780541 - 35780424
Alignment:
Q  179 ttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccatt-agtaatttgcaatccagtcactggggagtttataagacttc 277  Q
    |||| |||||||||||||| ||||||||||||  | |||||| |   | || ||| || ||| |||||||| |||||||| |||||||| ||||||||||    
T  35780541 ttgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagacttc 35780442  T
Q  278 ctaaagctactgcgactc 295  Q
    || |||||||| ||||||    
T  35780441 ctgaagctactacgactc 35780424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 9443667 - 9443627
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggt 374  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9443667 gctggttttggattccaacctaaaactaatgaatataaggt 9443627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 16716939 - 16716886
Alignment:
Q  334 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgg 387  Q
    ||||||||||| ||| | |||||||||||||||||||| |||||  ||||||||    
T  16716939 gctggttttggtttctatcctaaaactaatgaatataaagtgatacatatttgg 16716886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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