View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_39 (Length: 426)
Name: NF0740_low_39
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_39 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 7501644 - 7501995
Alignment:
| Q |
13 |
aatatcaaagttgctaaaccatgttggatttcgtaccgtctaccctaaattcggatacagtgtggcagtatagtgccaatataacggatatttaacaatt |
112 |
Q |
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| T |
7501644 |
aatatcaaagttgctaaaccatgttggatttcgtatcgtctaccctaaattccgatacggtatggcagtatagtgccaatataacggatatttaacaatt |
7501743 |
T |
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| Q |
113 |
aacactcattagtcataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttccta |
212 |
Q |
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| T |
7501744 |
aacactcattagtcataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctg |
7501843 |
T |
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| Q |
213 |
caaaagtttgctgtagtgttctacaagtcatatcaattactggccatttcaaaagatgaaactaatttttaaacaaggaaattttcatgtgttgttctat |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7501844 |
caaaagtttgttgtagtgttctacaagtcatatcaattactggacatttcaaaagatgaaactaatttttaaacaaggaaactttcatgtgttgttctat |
7501943 |
T |
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| Q |
313 |
gatgaaaaaccatataatgcacaaccctgaggcttggtctaccccttaaaag |
364 |
Q |
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| T |
7501944 |
gatgaaaaaccatataatgcaccaccctgaggcttggtctgccccttaaaag |
7501995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 7498736 - 7498830
Alignment:
| Q |
126 |
cataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctacaaaagttt |
221 |
Q |
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| T |
7498736 |
cataaaactcaaccaagttgtatcatttagaaaataccagaaattgtatcattcttcatcgatatttcaattact-ggagtttcctacaaaagttt |
7498830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 13450 - 13408
Alignment:
| Q |
119 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
161 |
Q |
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| T |
13450 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
13408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 33280803 - 33280845
Alignment:
| Q |
119 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
161 |
Q |
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| T |
33280803 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
33280845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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