View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_41 (Length: 418)

Name: NF0740_low_41
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_41
NF0740_low_41
[»] chr1 (2 HSPs)
chr1 (13-404)||(7100492-7100868)
chr1 (13-404)||(7580372-7580754)
[»] chr5 (23 HSPs)
chr5 (77-404)||(17984019-17984352)
chr5 (13-394)||(29854382-29854763)
chr5 (13-394)||(29873245-29873626)
chr5 (42-394)||(30476475-30476827)
chr5 (21-410)||(30520263-30520652)
chr5 (21-410)||(30560603-30560992)
chr5 (13-141)||(30061443-30061571)
chr5 (13-141)||(30337432-30337560)
chr5 (13-141)||(30750717-30750845)
chr5 (33-134)||(17417507-17417608)
chr5 (13-375)||(30401145-30401510)
chr5 (13-143)||(30207593-30207723)
chr5 (23-141)||(30676195-30676313)
chr5 (21-136)||(30241293-30241408)
chr5 (267-375)||(30207847-30207955)
chr5 (267-393)||(30329496-30329622)
chr5 (254-361)||(30675975-30676082)
chr5 (321-394)||(30241047-30241120)
chr5 (23-78)||(30712398-30712453)
chr5 (253-375)||(17417341-17417463)
chr5 (249-285)||(30061679-30061715)
chr5 (249-285)||(30484708-30484744)
chr5 (249-285)||(30750953-30750989)
[»] chr3 (1 HSPs)
chr3 (14-394)||(25292601-25292981)
[»] chr4 (4 HSPs)
chr4 (42-394)||(52353059-52353413)
chr4 (24-327)||(13617681-13617987)
chr4 (343-404)||(13617991-13618052)
chr4 (23-84)||(20295546-20295607)
[»] chr7 (1 HSPs)
chr7 (23-141)||(26708413-26708531)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 7100492 - 7100868
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7100492 agacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatctttggttcagcaataaa 7100591  T
Q  113 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7100592 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttcggcaatatgactg 7100691  T
Q  213 agtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttga 312  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||               ||||    
T  7100692 agtctgctagtaatttcattcaacctactgcctatgtaatggcgaaacatgacattctttggtttgaaagaggataagccc---------------ttga 7100776  T
Q  313 tggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttc 404  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100777 tggaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttc 7100868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 7580754 - 7580372
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| |||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||     
T  7580754 agacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacacctttggttcggcaataat 7580655  T
Q  113 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactg 212  Q
    |||||||||||||||||| |||||||||||| |||||| ||  ||||||  || |||||||||||  | ||| || ||||||  ||| ||||| ||  ||    
T  7580654 ggagctggtttggcgccagtcagccacttcaattggtttttctgtaacaacaataccttctcgtaaaagaaacttgttcttattttcagcaatttggttg 7580555  T
Q  213 agtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttga 312  Q
    |||||||| | ||| || ||||||||| ||||||  ||| | ||||||||||| |||||| ||||||||         ||||| ||||||  ||||||||    
T  7580554 agtctgcttgcaatctctttcaacctagtgcctaaatcacgtcgaaacatgacgttctttagtttgaaa---------cccttgagtcgactggatttga 7580464  T
Q  313 tggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttc 404  Q
    |  |||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  7580463 ttaaacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttc 7580372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 77 - 404
Target Start/End: Original strand, 17984019 - 17984352
Alignment:
Q  77 atcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggt---tgttgcgtaacagtaacaccttct 173  Q
    |||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||| |||||   | || ||||||||||| |||||||    
T  17984019 atcttctcgtccaaacacttttgattcagcaataacggggctggtttggcgccattcagccacttcacttggtaatttttccgtaacagtaataccttct 17984118  T
Q  174 cgtagcataaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttg 273  Q
    |||||||||||||||||||||||||| ||||||| |  |||||| || | ||| || ||||||||||||||||||||| ||||||||||||  |||||||    
T  17984119 cgtagcataaaattcttcttaccttcagcaatataatcgagtctacttgcaatctctttcaacctactgcctatgtcacggcgaaacatgaagttctttg 17984218  T
Q  274 gtt---tgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcag 370  Q
    | |   ||||||||||| | | ||||| | ||| ||||||||| ||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||    
T  17984219 gattgatgaaagaggatgaactcttaaattgagtggatttgatcgaacattcatctaggatatcatcaagcacaaacaccgcatctttgagttgctgcag 17984318  T
Q  371 ccatatttgaatagagcggtctgttaattgcttc 404  Q
    ||||||||||||||| || ||||| || ||||||    
T  17984319 ccatatttgaatagaacgatctgtcaaatgcttc 17984352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 29854382 - 29854763
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| |||||||| |||||||| |  |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||     
T  29854382 agacggaaaggaagtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagcaataat 29854481  T
Q  113 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactg 212  Q
    |||||||||||| ||||||||||| |||||| |||    || | ||||| ||  ||| || ||||| | ||| || |||||||  || ||||||| |       
T  29854482 ggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatcc 29854581  T
Q  213 agtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttga 312  Q
    | | | || ||||| || ||||||||  |||| || ||||||||||||||||  ||||||||||||||||||| ||| ||  ||||| || | || ||||    
T  29854582 aatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggtttgaaagaggttaatcctctaagttgaccagacttga 29854681  T
Q  313 tggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
    | ||||| ||||||||||||||||| || ||||| || |||||||||||||| || |||||||  | ||||||| |||||||    
T  29854682 ttgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttaatagagtggtctgt 29854763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 29873245 - 29873626
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||     
T  29873245 agacggaaaggaagtcagagtccctcgcttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaacaataat 29873344  T
Q  113 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactg 212  Q
    |||||||||||| ||||||||||| |||||| |||    || | ||||| ||  ||| || ||||| | ||| || |||||||  || ||||||| |       
T  29873345 ggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatcc 29873444  T
Q  213 agtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttga 312  Q
    | ||| || ||||| || ||||||||  |||| || ||| ||||||||||||  || |||||||| ||||||  | | ||  ||||| || | || ||||    
T  29873445 aatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggtttaaaagagattgatcctctaagttgaccagacttga 29873544  T
Q  313 tggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
    | || || ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||  | |||||||||||||||    
T  29873545 tcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaatagagcggtctgt 29873626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 42 - 394
Target Start/End: Original strand, 30476475 - 30476827
Alignment:
Q  42 tgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 141  Q
    |||||||||||||| || |||||| ||||| |||||||| ||||||||||||| || ||||||||||||| |||||| ||||||||||||||||| ||||    
T  30476475 tgggtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaactt 30476574  T
Q  142 cagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctact 241  Q
    || ||||   || | |||||   ||||| |||||||  | ||| || |  |||| ||| ||||| |||  || ||| || |||||||| ||||||||  |    
T  30476575 catttggcctttccctaacaacgacaccctctcgtaaaagaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaacctttt 30476674  T
Q  242 gcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaaga 341  Q
    ||| |||||| |||||||||  |  |||||| | |||||| ||||  || | ||||||| |   ||||  ||||||||||||||||| |||||||||||     
T  30476675 gccgatgtcacggcgaaacacaatgttctttaggttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagc 30476774  T
Q  342 acatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
    ||||| || |||||||||||||| || |||||||  | |||||||||||||||    
T  30476775 acatatacagcatctttgagttgttggagccataccttaatagagcggtctgt 30476827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 410
Target Start/End: Complemental strand, 30520652 - 30520263
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctgg 120  Q
    |||| ||||||| || | || |||||||||||||| || |||||||||||||||||||||||||| ||| | || ||||||||||||||||  ||||| |    
T  30520652 aggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctag 30520553  T
Q  121 tttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactgagtctgct 220  Q
    |||| |||||||||||||| |   |||    || | |||||| ||||| |||| |||| | ||| || || |||| ||| ||||||| |  || |||| |    
T  30520552 tttgacgccattcagccacattgattgacctttccctaacagcaacacattcttgtagaagaaacttgtttttactttcagcaatatcatcgaatctgtt 30520453  T
Q  221 agtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacat 320  Q
     |||||||| || |||||| |||| || | |||||||||||||| |||||||  | | ||||| |||| ||||||  |||||| |||||  ||||||||     
T  30520452 tgtaatttctttaaacctagtgccaattttatggcgaaacatgatattctttaatgtaaaagaagatatgcccttttgtcgagtggattgaatggaacac 30520353  T
Q  321 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcatctca 410  Q
    |||||||| |||||||| || |  || | ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||| |||||    
T  30520352 tcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctca 30520263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 410
Target Start/End: Complemental strand, 30560992 - 30560603
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctgg 120  Q
    |||| ||||||| || | || |||||||||||||| || |||||||||||||||||||||||||| ||| | || ||||||||||||||||  ||||| |    
T  30560992 aggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctag 30560893  T
Q  121 tttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactgagtctgct 220  Q
    |||| |||||||||||||| |   |||    || | |||||| ||||| |||| |||| | ||| || || |||| ||| ||||||| |  || |||| |    
T  30560892 tttgacgccattcagccacattgattgacctttccctaacagcaacacattcttgtagaagaaacttgtttttactttcagcaatatcatcgaatctgtt 30560793  T
Q  221 agtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacat 320  Q
     |||||||| || |||||| |||| || | |||||||||||||| |||||||  | | ||||| |||| ||||||  |||||| |||||  ||||||||     
T  30560792 tgtaatttctttaaacctagtgccaattttatggcgaaacatgatattctttaatgtaaaagaagatatgcccttttgtcgagtggattgaatggaacac 30560693  T
Q  321 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcatctca 410  Q
    |||||||| |||||||| || |  || | ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||| |||||    
T  30560692 tcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctca 30560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 30061443 - 30061571
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||     
T  30061443 agacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataat 30061542  T
Q  113 ggagctggtttggcgccattcagccactt 141  Q
    ||||| ||||||||||| |||||| ||||    
T  30061543 ggagccggtttggcgcccttcagctactt 30061571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 30337560 - 30337432
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| ||||||||||||||| | || |||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||     
T  30337560 agacggaaaggaagtcagagtccttcgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataat 30337461  T
Q  113 ggagctggtttggcgccattcagccactt 141  Q
    ||||| ||||||||||| |||||| ||||    
T  30337460 ggagccggtttggcgcccttcagctactt 30337432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 30750717 - 30750845
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||     
T  30750717 agacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataat 30750816  T
Q  113 ggagctggtttggcgccattcagccactt 141  Q
    ||||| ||||||||||| |||||| ||||    
T  30750817 ggagccggtttggcgcccttcagctactt 30750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 17417608 - 17417507
Alignment:
Q  33 tccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccatt 132  Q
    ||||| || |||||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17417608 tcccttgcttgggtgagcagaaactcaacaatcttctttgtatcatcttcccgtccaaacacctttggttcagcaataaaggagctggtttggcgccatt 17417509  T
Q  133 ca 134  Q
    ||    
T  17417508 ca 17417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 30401145 - 30401510
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| ||||||||||||| |||||||||||| | ||||| ||||||||     
T  30401145 agacggaaaggaagtcagagtccctcgcatgggtgagaagaaactcaaaaatcttttctttatcatcttttcgtccaaacacttctggtttagcaataat 30401244  T
Q  113 ggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaac---accttctcgtagcataaaattcttcttaccttctgcaatatga 209  Q
    |||| || |||| ||||||||| | ||||||  ||    || | |||||   ||   ||| |||||||| | ||| || ||||||   || ||||||| |    
T  30401245 ggagttgatttgacgccattcatctacttcatctgagctttccctaacatatacagtaccatctcgtagaagaaatttgttcttaatatcagcaatatca 30401344  T
Q  210 ctgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatt 309  Q
       | ||| || ||||| || ||||||||  |||| || | | ||||||||| ||  |||||||| ||||||||| || ||||   ||||||||| || |    
T  30401345 tccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagagaatgagcctccaagtcgagcagact 30401444  T
Q  310 tgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 375  Q
     ||| ||||| ||||||||||||||||| || ||||| || |||||||||||||| || |||||||    
T  30401445 cgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccata 30401510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 30207593 - 30207723
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaa 112  Q
    ||||||| |||||||| |||||||| || |||||||||||||| || | |||||||||||||||||||||||| ||||| || ||||||||||||||||     
T  30207593 agacggaaaggaagtcggagtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttcagcaataat 30207692  T
Q  113 ggagctggtttggcgccattcagccacttca 143  Q
     ||||| ||||| |||||||| || ||||||    
T  30207693 agagctagtttgacgccattctgctacttca 30207723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 30676313 - 30676195
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggtt 122  Q
    ||||||||||||| | || |||||||||||||| || |||||||| |||| |||| |||||||||||||||| |||| |||||||||||  |||| ||||    
T  30676313 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgattcagcaataattgagccggtt 30676214  T
Q  123 tggcgccattcagccactt 141  Q
    ||||||| |||||| ||||    
T  30676213 tggcgcccttcagctactt 30676195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 30241408 - 30241293
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctgg 120  Q
    |||||||| |||||| | || |||||||||||||| |  | |||||||| |||||| ||||||||||||||||| |||||||||| |||||  | |||||    
T  30241408 aggaagtcggagtcctttgcttgggtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttggttcagtaataatagcgctgg 30241309  T
Q  121 tttggcgccattcagc 136  Q
    |||| |||||||||||    
T  30241308 tttgacgccattcagc 30241293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 30207847 - 30207955
Alignment:
Q  267 ttctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgct 366  Q
    ||||||||||||||||| ||| || |  |||||||||| || | ||| || || ||||||||||||||||| || ||||| || |||||||||||||| |    
T  30207847 ttctttggtttgaaagatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgtt 30207946  T
Q  367 gcagccata 375  Q
    | |||||||    
T  30207947 gtagccata 30207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 30329622 - 30329496
Alignment:
Q  267 ttctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgct 366  Q
    ||||||||||||||||||||| ||||  ||| |||| | || | |||  | || |||||||||||||||||||| ||||| |   ||||||||| ||| |    
T  30329622 ttctttggtttgaaagaggatgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgtt 30329523  T
Q  367 gcagccatatttgaatagagcggtctg 393  Q
    | |||||||| | ||||||||||||||    
T  30329522 gaagccatatcttaatagagcggtctg 30329496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 30676082 - 30675975
Alignment:
Q  254 gcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgca 353  Q
    |||||||||||  ||||||||||||| ||||||| | ||  ||||| || | || ||||| ||| | ||||||||||||||||| || ||||| || |||    
T  30676082 gcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagca 30675983  T
Q  354 tctttgag 361  Q
    ||||||||    
T  30675982 tctttgag 30675975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 30241120 - 30241047
Alignment:
Q  321 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
    ||||||||||||||||| || ||||| ||  ||||||||||||| ||||||||||  | |||||||| ||||||    
T  30241120 tcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgt 30241047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 30712453 - 30712398
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcat 78  Q
    ||||||||||||| | || |||||||||||||| || |||||||| ||||||||||    
T  30712453 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcat 30712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 17417463 - 17417341
Alignment:
Q  253 ggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgc 352  Q
    ||||||| ||||  ||||||||||||||| ||||| ||||  |||| ||| | || | ||| || || |||||||| |||||||| || ||||| ||  |    
T  17417463 ggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccagactcgattgagcactcatcaagaatatcatctagcacataaacaac 17417364  T
Q  353 atctttgagttgctgcagccata 375  Q
    |||||||||||| || |||||||    
T  17417363 atctttgagttgttgaagccata 17417341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 30061679 - 30061715
Alignment:
Q  249 tcatggcgaaacatgacattctttggtttgaaagagg 285  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30061679 tcatggcgaaacatgatgttctttggtttgaaagagg 30061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 30484708 - 30484744
Alignment:
Q  249 tcatggcgaaacatgacattctttggtttgaaagagg 285  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30484708 tcatggcgaaacatgatgttctttggtttgaaagagg 30484744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 30750953 - 30750989
Alignment:
Q  249 tcatggcgaaacatgacattctttggtttgaaagagg 285  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30750953 tcatggcgaaacatgatgttctttggtttgaaagagg 30750989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 25292981 - 25292601
Alignment:
Q  14 gacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaag 113  Q
    |||||| ||||||||||||||||| || ||||| |||||||| || ||| |||||||||||||||||||||||||||| || |||||||| |||||||      
T  25292981 gacggaaaggaagtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctcgtccaaatacttttggttcggcaataata 25292882  T
Q  114 gagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcgtagcataaaattcttcttaccttctgcaatatgactga 213  Q
    || || ||||||||| ||||||| ||||||||||    || | |||||||  |||| | ||| || | ||| || ||||||  | | ||||||| |   |    
T  25292881 gaactagtttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcgaagaagaaacttgttcttagttgcagcaatatcatcca 25292782  T
Q  214 gtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgat 313  Q
     ||| || ||||| || |||||| |  |||| |||| |||| |||||||||  ||||||||||||||||||||| ||||  ||||||||   ||||||||    
T  25292781 atctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaagaggatgagcctctaagtcgactagatttgat 25292682  T
Q  314 ggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
      | || ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||  | ||||||||| |||||    
T  25292681 caatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgatctgt 25292601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 394
Target Start/End: Original strand, 52353059 - 52353413
Alignment:
Q  42 tgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 141  Q
    |||||||||||||| ||  |||||||||||||||| ||||  |||||||| |  || ||||||| || || |||||||||||||||||||||||| | ||    
T  52353059 tgggtgagaagaaactcggcaatcttctctttatcttctttccgtccaaagattttcggttcagtaaaaatggagctggtttggcgccattcagctattt 52353158  T
Q  142 cagttggttgttgcgtaacagtaaca---ccttctcgtagcataaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacct 238  Q
    ||||||    || | |||||||  ||   || |||||||| | ||| || ||||| | ||| ||||  |||  || ||| || |||||||| ||||| ||    
T  52353159 cagttgagctttcc-taacagttccagtaccctctcgtagaagaaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatct 52353257  T
Q  239 actgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatca 338  Q
      | || || ||||| |||||||  | ||| ||||||||||| || ||||| ||| ||||||||   |||||||| |||||||||||||||||||||||     
T  52353258 gtttccaatatcatgacgaaacacaatattttttggtttgaatgacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcg 52353357  T
Q  339 agaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 394  Q
    ||||| || || ||||||||||||||||| ||||||| || |||||||||||||||    
T  52353358 agaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgt 52353413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 13617681 - 13617987
Alignment:
Q  24 aagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggttt 123  Q
    ||||||||| ||||  | ||||||||| ||||   ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||  |||| | ||||    
T  13617681 aagtcagaggccctcacttgggtgagatgaaacctaacaatcttctctttattatcttatcgtccaaacacctttgattcagcaatagtggagatcgttt 13617780  T
Q  124 ggcgccattcagccacttcagttggt--tgttgcgtaacagtaacaccttctcgtag-cataaaattcttcttaccttctgcaatatgactgagtctgct 220  Q
    ||| ||||||| |||||||| |||||  | ||   ||||||||| |||||||| |||  | ||| || ||||||| ||  ||||| |||   | | ||||    
T  13617781 ggcaccattcaaccacttcaattggtaattttctctaacagtaataccttctcatagaaagaaacttgttcttacttttagcaatttgatcaattttgct 13617880  T
Q  221 agtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacat 320  Q
     | ||| |  ||||||||||| ||||||||||||  | || |||  | |||| ||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  13617881 tgcaatctttttcaacctacttcctatgtcatggaaatacttgatgtcctttagtttgaaagtggacaagcccttaagtcgagtggatttgatggaacat 13617980  T
Q  321 tcatcaa 327  Q
    |||||||    
T  13617981 tcatcaa 13617987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 13617991 - 13618052
Alignment:
Q  343 catacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttc 404  Q
    |||||| |||||||| |||||| || |||||||||| |||||||| | || |||||||||||    
T  13617991 catacattgcatcttcgagttgttggagccatattttaatagagcagactcttaattgcttc 13618052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 20295607 - 20295546
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctc 84  Q
    ||||||||||||| | || |||||||||||||| || |||||||| | ||||||||| ||||    
T  20295607 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttttttatcatcgtctc 20295546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 26708413 - 26708531
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttggttcagcaataaaggagctggtt 122  Q
    ||||||||||||| | || |||||||||||||| || |||||||| ||||||||||| |||| ||| ||| | |||| ||||  |     ||||||||||    
T  26708413 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcatcgtctcttcccaacgcttttgtttcaagaggggtggagctggtt 26708512  T
Q  123 tggcgccattcagccactt 141  Q
    ||||||| |||||| ||||    
T  26708513 tggcgcccttcagctactt 26708531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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