View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_43 (Length: 411)
Name: NF0740_low_43
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 98 - 385
Target Start/End: Original strand, 33298839 - 33299127
Alignment:
| Q |
98 |
agtgtgtatgtttgtaagtgcaaaactaattgatgatataatatttaacattttgcagtggaactgggaaactatattaatcggagcaagctttttgagt |
197 |
Q |
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| T |
33298839 |
agtgtgtatgtttgtaagtgcaaaactgattgatgatataatatttaacattttgcagtggaactgggaaactatattaatcggagctagctttttgagt |
33298938 |
T |
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| Q |
198 |
ttccttctggtcgccaaatttattgtatgacattaaactccctacttcatcttactattatatctt-aaatatttaggactgtaaaagttttttctaatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |
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| T |
33298939 |
ttccttctggtcgccaaatttattgtatgacattaaactccctatttcatcttactattgtttcttaaaatatttaggactataaaagttttttctaatt |
33299038 |
T |
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| Q |
297 |
atttcatgttgtgttgcttagggaaagaagaacaagaaattcttctgggtgccagcaattgccccattgatatcagttgtgttgtccac |
385 |
Q |
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| T |
33299039 |
atttcatgctgtgttgattagggaaagaagaacaagaaattcttctgggtgccagcaattgccccattgatatcagttgtgttgtccac |
33299127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 25720142 - 25720202
Alignment:
| Q |
316 |
agggaaagaagaacaagaaattcttctgggtgccagcaattgccccattgatatcagttgt |
376 |
Q |
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| T |
25720142 |
agggaaagaagggccaaaaattcttctgggttccagcaattgctccattgatatctgttgt |
25720202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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