View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_44 (Length: 410)

Name: NF0740_low_44
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_44
NF0740_low_44
[»] chr4 (3 HSPs)
chr4 (76-382)||(55265731-55266031)
chr4 (83-382)||(55271618-55271916)
chr4 (17-58)||(29227231-29227272)
[»] scaffold0201 (1 HSPs)
scaffold0201 (17-56)||(8516-8555)
[»] scaffold0034 (1 HSPs)
scaffold0034 (17-56)||(101894-101933)
[»] chr7 (1 HSPs)
chr7 (17-56)||(32777695-32777734)
[»] chr2 (2 HSPs)
chr2 (17-58)||(8847529-8847570)
chr2 (12-56)||(37003654-37003698)
[»] chr8 (1 HSPs)
chr8 (335-363)||(43369158-43369186)
[»] chr5 (2 HSPs)
chr5 (17-53)||(17097790-17097826)
chr5 (20-56)||(42446282-42446318)
[»] chr1 (1 HSPs)
chr1 (20-56)||(7919053-7919089)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 76 - 382
Target Start/End: Complemental strand, 55266031 - 55265731
Alignment:
Q  76 atttctcataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctctgttctgttcagtggttagtt 175  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  55266031 atttctcataaaatatag-aaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctctgttc-----agtggttagtt 55265938  T
Q  176 aacacgtttatcttggctgattgcatgtttttgagcttatttatggtttggttatatgaatgtgtttgtgttgcactgttttattgccttaattgatttt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55265937 aacacgtttatcttggctgattgcatgtttttgagcttatttatggtttggttatgtgaatgtgtttgtgttgcactgttttattgccttaattgatttt 55265838  T
Q  276 gcttgtgttgcagatggctgagattgatttggaatggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgagcgcacc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55265837 gcttgtgttgcagatggctgagattgatttggaatggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcacc 55265738  T
Q  376 attaagt 382  Q
    |||||||    
T  55265737 attaagt 55265731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 83 - 382
Target Start/End: Complemental strand, 55271916 - 55271618
Alignment:
Q  83 ataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactc-ctctgttctgttcagtggttagttaacacg 181  Q
    ||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| | | ||  ||       ||||||||||||||||     
T  55271916 ataaaatgtagcaaaaactagcaataagatagttatccttaccgacagacatcccacactcactctcccacttagt-------agtggttagttaacact 55271824  T
Q  182 tttatcttggctgattgcatgtttttgagct-------------tatttatggtttggttatatgaatgtgtttgtgttgcactgttttattgccttaat 268  Q
    ||| |||| ||||||||||||| ||||||||             ||||||||||||||||||| |||||||||||||||        |||||||||||||    
T  55271823 tttgtctttgctgattgcatgtgtttgagctgagatcaaatgcttatttatggtttggttataggaatgtgtttgtgtt--------ttattgccttaat 55271732  T
Q  269 tgattttgcttgtgttgcagatggctgagattgatttggaatggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttga 368  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55271731 tacttttgcttgtgttgcagatggctgagattgatttggaatggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttga 55271632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29227231 - 29227272
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaagttat 58  Q
    ||||||||||||| |||||||| |||||||| ||||||||||    
T  29227231 gagaaagtagaagaacaatgtgtgtatgagagagaaagttat 29227272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 8555 - 8516
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8555 gagaaagtagaaggacaatgtgagtatgagagagaaagtt 8516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 101894 - 101933
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  101894 gagaaaatagaaggacaatgtgagtatgagagagaaagtt 101933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 32777695 - 32777734
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  32777695 gagaaagtagaaggacagtgtgagtatgagagagaaagtt 32777734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 8847570 - 8847529
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaagttat 58  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  8847570 gagaaagtagaagaataatgtgtgtatgagaaagaaagttat 8847529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 37003698 - 37003654
Alignment:
Q  12 aaagggagaaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    |||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  37003698 aaagagagaatgtagaagaacaatgtgagtatgagagagaaagtt 37003654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 43369186 - 43369158
Alignment:
Q  335 tgcttcatgttgtttatcgtgttggtgac 363  Q
    |||||||||||||||||||||||||||||    
T  43369186 tgcttcatgttgtttatcgtgttggtgac 43369158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 17097790 - 17097826
Alignment:
Q  17 gagaaagtagaaggacaatgtgagtatgagaaagaaa 53  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17097790 gagaaagtagaatgacaatgtgagtatgagatagaaa 17097826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 42446282 - 42446318
Alignment:
Q  20 aaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  42446282 aaagtagaaggacaatgtgagtaagagagagaaagtt 42446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 7919053 - 7919089
Alignment:
Q  20 aaagtagaaggacaatgtgagtatgagaaagaaagtt 56  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  7919053 aaagtagaaggacaatatgagtatgagagagaaagtt 7919089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4144 times since January 2019
Visitors: 4827