View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_45 (Length: 409)
Name: NF0740_low_45
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 33232062 - 33232321
Alignment:
| Q |
16 |
atagcagtagaggttcggatattactgtgaaatcctttgatgaatttctcaaacagatcttaggttaaaccatcgcagcccgaggaggtaagtattcact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33232062 |
atagcagtagaggttcggatattactgtgaaatcctttgatgaatttctcaaacagatcttaggttaaaccatcgcagcccgaggaggtaagtattcact |
33232161 |
T |
|
| Q |
116 |
tgagaatgatgaaaaacaatttatttgtgggctaaaatgaaatnnnnnnnnnnnnnncctgcgttgaaatgaaaaaatagcacttaatatgtaaaatgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33232162 |
tgagaatgatgaaaaacaatttatttgtgggctaaaatgaaat---ataaaaaaaaacctgcgttgaaatgaaaaaatagcacttaatatgtaaaatgtt |
33232258 |
T |
|
| Q |
216 |
ttcattttcttaaatcatactacttaataaagaatggagatgtaacctattattggcagatga |
278 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33232259 |
ttcattttcttaaatcatacttcgtaataaagaatggagatgtaacctattattggcagatga |
33232321 |
T |
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