View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_49 (Length: 404)
Name: NF0740_low_49
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 51755164 - 51754989
Alignment:
| Q |
168 |
aaggttataaggctcaattgcttattatgtaagagtttaattttccacgtggggggatggagatgatgtgggagtgatttggctaattccttttacacaa |
267 |
Q |
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| T |
51755164 |
aaggttataaggctcaattgcttattatgtaagagtttaattttccacgtgggggcatggggatgatgtgggagtgatttggctaattccttttacacaa |
51755065 |
T |
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| Q |
268 |
catgatgtccataatcagcctcatatattgaatattttctctttttcatttaccaatttcatgttccatggccctc |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755064 |
catgatgtccataatcagcctcatatattgaatattttctctttttcatttaccaatttcatgttccatggccctc |
51754989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 51755378 - 51755266
Alignment:
| Q |
20 |
ttactgacttgagaaatctcatgaaattttcattgcagtaaatagtataattatacctcacgatatctctttactttttgttaccttatcaaaagaggtg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51755378 |
ttactgacttgagaaatctcatgaaattttcattgcagtaaatagtataattatacctcaccatatctctttactttttgttaccttatcaaaagaggtg |
51755279 |
T |
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| Q |
120 |
ttaaaggttaacc |
132 |
Q |
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| T |
51755278 |
ttaaaggttaacc |
51755266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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