View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_5 (Length: 646)
Name: NF0740_low_5
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_5 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Complemental strand, 8644792 - 8644156
Alignment:
| Q |
1 |
gtattggtggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatca |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
8644792 |
gtattgctgcttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacaaatatgttagacgaggcaatggctgggtgtttgatca |
8644693 |
T |
|
| Q |
101 |
tattgtccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8644692 |
tattgtccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatccc |
8644593 |
T |
|
| Q |
201 |
acttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttcctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8644592 |
acttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttcctt |
8644493 |
T |
|
| Q |
301 |
ctcctccagtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644492 |
ctcctccagtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattc |
8644393 |
T |
|
| Q |
401 |
ttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8644392 |
ttttcgtgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgggcaga |
8644293 |
T |
|
| Q |
501 |
cctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| || || ||| || |
|
|
| T |
8644292 |
cctgattcgcagcgttatggtttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatc-tactat |
8644194 |
T |
|
| Q |
601 |
gaaccggagaaatatagatgcaaagtttttcgaattca |
638 |
Q |
| |
|
||||| ||||| || | |||||||||||||||||| |
|
|
| T |
8644193 |
gaacccaagaaacatgctttcaaagtttttcgaattca |
8644156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 638
Target Start/End: Complemental strand, 8637440 - 8636811
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatcatattgtc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||| || | || ||| |||||| ||||||||| | ||||||||||||| ||| ||| |
|
|
| T |
8637440 |
tggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgtttgatcgtatggtc |
8637341 |
T |
|
| Q |
108 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
207 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | | |||| ||||||||||| || |
|
|
| T |
8637340 |
cttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcgttatcccacttgtg |
8637241 |
T |
|
| Q |
208 |
ttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcc |
307 |
Q |
| |
|
| |||||| || ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8637240 |
tgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctcc |
8637141 |
T |
|
| Q |
308 |
agtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgt |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || ||| ||| |
|
|
| T |
8637140 |
agtgttacaaaatcaaaataatggatttcgtcataacgagtgtattcgcattggagaattaaggggattactttatatttgtgatacatcttttttccgt |
8637041 |
T |
|
| Q |
408 |
gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8637040 |
gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgggcagacctgatt |
8636941 |
T |
|
| Q |
508 |
cgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccgg |
607 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || || ||| ||||||| | |
|
|
| T |
8636940 |
cgcagcgttatggtatatgatggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatc-tactatgaacccg |
8636842 |
T |
|
| Q |
608 |
agaaatatagatgcaaagtttttcgaattca |
638 |
Q |
| |
|
||||| | | | |||||||||| ||||||| |
|
|
| T |
8636841 |
agaaacttggtttcaaagtttttagaattca |
8636811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 92 - 638
Target Start/End: Complemental strand, 8678304 - 8677749
Alignment:
| Q |
92 |
gtttgatcatattgtccttgagataaacacacttggaa-catcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatct |
190 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
8678304 |
gtttgatcgtatgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggct |
8678205 |
T |
|
| Q |
191 |
tcattatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaa |
290 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8678204 |
ccgttatcccacttgtattaatggtgcgcttcattggatcggatttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaa |
8678105 |
T |
|
| Q |
291 |
tcatttccttctcctccagtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcg |
390 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
8678104 |
tcatttccttctcctccagtatttcaaaatcataataatggatttcgttgtaacaagcgtattcacatgggaaaattaagaggattactttacatttgcg |
8678005 |
T |
|
| Q |
391 |
atacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttg-------- |
482 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
8678004 |
atacatatcctttccgtgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacattgatattgtggtccgtcc |
8677905 |
T |
|
| Q |
483 |
-gtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgc |
581 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
8677904 |
tgtcagtcctttgggcagacctgattcgcggcattatggtttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgc |
8677805 |
T |
|
| Q |
582 |
aactgttttgtcttaccatgaaccggagaaatatagatgcaaagtttttcgaattca |
638 |
Q |
| |
|
|| ||| || || ||| ||||||| |||||| || | | |||||||||||||||||| |
|
|
| T |
8677804 |
aattgtcttatc-tactatgaacccgagaaacatggtttcaaagtttttcgaattca |
8677749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 107 - 636
Target Start/End: Complemental strand, 8535969 - 8535447
Alignment:
| Q |
107 |
ccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttat |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| | |
|
|
| T |
8535969 |
ccttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttgt |
8535879 |
T |
|
| Q |
207 |
gttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctc |
306 |
Q |
| |
|
|| |||||||| || |||||| | |||||||| | | ||||||| |||||| |||||| || |||||||||| | || | |||||||||||||||| |
|
|
| T |
8535878 |
gtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctc |
8535779 |
T |
|
| Q |
307 |
cag---tgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattctt |
402 |
Q |
| |
|
|| ||||| |||||| ||||||||||||| | |||| | |||| ||||||||||||||| |||||| ||||||||||| ||| | | || || |
|
|
| T |
8535778 |
cacagatgtttggaaatcataataatggatttcttagtaatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgaccttttt |
8535679 |
T |
|
| Q |
403 |
ttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacc |
502 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||| || || | |
|
|
| T |
8535678 |
atc-tgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatacttcattcaatccttcggaaagtcg |
8535580 |
T |
|
| Q |
503 |
tgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatga |
602 |
Q |
| |
|
|| | | | | | ||||||||| | ||||| |||||||||||||||| || |||||||||||| |||||||||||||||| |||||| || ||| |||| |
|
|
| T |
8535579 |
tgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcctgcaattgttttatc-tactatga |
8535481 |
T |
|
| Q |
603 |
accggagaaatatagatgcaaagtttttcgaatt |
636 |
Q |
| |
|
||| ||||||||| ||| | |||||||||||||| |
|
|
| T |
8535480 |
acctgagaaatatggattcgaagtttttcgaatt |
8535447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 106 - 639
Target Start/End: Complemental strand, 8529406 - 8528889
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| |
|
|
| T |
8529406 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
8529316 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| | | ||||||| |||||| |||||| || |||| |||||||||||| || |||||||||||| |
|
|
| T |
8529315 |
tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcct |
8529216 |
T |
|
| Q |
306 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
401 |
Q |
| |
|
||| |||||| |||||| ||||| ||| || ||| || |||| ||||||||||||||| |||||| || |||||||| ||| | | || |
|
|
| T |
8529215 |
ccacatgtgtttggaaatca---taatgttttttgttgtag---gcctattagcatgggagaattaaagggatttctatacatttgtgatccgaccttta |
8529122 |
T |
|
| Q |
402 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
501 |
Q |
| |
|
| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | |
|
|
| T |
8529121 |
tatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg---atc |
8529026 |
T |
|
| Q |
502 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatg |
601 |
Q |
| |
|
|| | | | | ||||||||||| | |||||| |||||||||||||||| || |||||||||||| ||||||||||| ||| |||||| | ||| | | |
|
|
| T |
8529025 |
gtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgtttt-acctactacg |
8528927 |
T |
|
| Q |
602 |
aaccggagaaatatagatgcaaagtttttcgaattcat |
639 |
Q |
| |
|
|||| || |||||| | | ||||||||||||||||||| |
|
|
| T |
8528926 |
aacctgaaaaatatgggttcaaagtttttcgaattcat |
8528889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 106 - 639
Target Start/End: Original strand, 9074363 - 9074883
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||||| |||||| ||||||||||||||| || |||| ||| | |||||||||| |
|
|
| T |
9074363 |
tccttcagataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttctttt---------ttgagtctcgagtatcccacttg |
9074453 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| |||||||| ||||||||||| |||| ||| || | ||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9074454 |
tgtgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcct |
9074553 |
T |
|
| Q |
306 |
cc---agtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattct |
401 |
Q |
| |
|
|| |||||| ||| || |||| |||| || | |||| | ||| |||||||||||||| |||||| ||||||||||| || | | ||| | |
|
|
| T |
9074554 |
ccgcatgtgtttggaaaccataatagtggaattgttgataacagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttt |
9074650 |
T |
|
| Q |
402 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
501 |
Q |
| |
|
| || ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||| ||||| |||| | | |
|
|
| T |
9074651 |
tatc-tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtc |
9074749 |
T |
|
| Q |
502 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatg |
601 |
Q |
| |
|
| | | | ||| |||||| |||||| |||||||||||||||| || |||||||||||| ||||||||| || ||| |||||| |||| | ||| |
|
|
| T |
9074750 |
ttattacatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatctt-ctatg |
9074845 |
T |
|
| Q |
602 |
aaccggagaaatatagatgcaaagtttttcgaattcat |
639 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
9074846 |
aacctgagaaatatggattcaaagtttttcgaattcat |
9074883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 106 - 470
Target Start/End: Original strand, 1599937 - 1600293
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | ||||||||| |
|
|
| T |
1599937 |
tccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttg---------gatgcttaagaatcccacttg |
1600027 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| |||||||| ||||||||||| |||| ||||| ||| ||| ||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
1600028 |
tgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcct |
1600127 |
T |
|
| Q |
306 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattct |
401 |
Q |
| |
|
||| | |||| |||||| ||||||||| | || ||||| | | || ||||||||||||||| |||||| ||||||||||| || ||| || | |
|
|
| T |
1600128 |
ccacatgagtttggaaatcataataatggaacttgtggtaacagccatgttagcatgggagaattaaagggatttctttacatttgtgactac--ctttt |
1600225 |
T |
|
| Q |
402 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaag |
470 |
Q |
| |
|
| || ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1600226 |
tatc-tgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaag |
1600293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 106 - 589
Target Start/End: Complemental strand, 8641849 - 8641357
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||| ||||||||| | || |||| | |||||||||| |
|
|
| T |
8641849 |
tccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatt---------tcgagtcttaagtatcccacttg |
8641759 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| ||| ||| |||||||| |||| |||||||| || ||||||| ||||| ||||||||||| ||||||||||| ||| | | ||||||||||||| |
|
|
| T |
8641758 |
tgtgaatagtgttcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcct |
8641659 |
T |
|
| Q |
306 |
cca---gtgtttcaaaatcaaaataat---ggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatatt |
399 |
Q |
| |
|
||| |||||| |||||| |||||| ||| ||| | ||||| || |||| |||||||||| |||| |||||| | ||||||||| ||| | | |
|
|
| T |
8641658 |
ccacatgtgtttggaaatcataataataatggaattcatggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgact |
8641559 |
T |
|
| Q |
400 |
c-----ttttcgt-gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattg---atactttggtcagtcc |
490 |
Q |
| |
|
| ||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |||| | | |
|
|
| T |
8641558 |
cgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacattgataatacttcagtcaattc |
8641459 |
T |
|
| Q |
491 |
tttgggcagacctgat---tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgt |
587 |
Q |
| |
|
||||||| |||| | | | |||||||| ||||||||||||||| |||||||||||| || ||||| ||| | |||||||||||||||| ||| |
|
|
| T |
8641458 |
tttgggctatcctggtctcttttggggttatggtgtatgttggccggtaatacactttgaagatggtgctgcgttatggttatatcattcctgcaattgt |
8641359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 2856426 - 2856895
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatcatattgtc |
107 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| ||||||| || | | ||| |||||||||||||| ||| | | ||||||||| | | | || |
|
|
| T |
2856426 |
tggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtg |
2856525 |
T |
|
| Q |
108 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
207 |
Q |
| |
|
|| |||||| |||| || |||||||||||||||||||||| |||||| ||||||||||||||| || ||||| ||| |||| || | || |
|
|
| T |
2856526 |
ctcgagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttctttt---------ttgaagcttttgaatccaacatgtg |
2856616 |
T |
|
| Q |
208 |
ttaatggtgcgcttcattggatcagatttgaggatg---aagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcc |
304 |
Q |
| |
|
| ||||| || ||||||||||| | |||||| | | || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
2856617 |
tgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcc |
2856716 |
T |
|
| Q |
305 |
tcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattct |
401 |
Q |
| |
|
|||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || ||| |
|
|
| T |
2856717 |
tccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaattgaagggatttctttacatttgtcatagatcgtct |
2856816 |
T |
|
| Q |
402 |
tttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
480 |
Q |
| |
|
| || || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2856817 |
ct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2856895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 2874036 - 2874505
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatcatattgtc |
107 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||| ||||||| || | | ||| |||||||||||||| ||| | | ||||||||| | | | || |
|
|
| T |
2874036 |
tggttttagtttccaacccaaaactaatgaatataaggtgatcataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtg |
2874135 |
T |
|
| Q |
108 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
207 |
Q |
| |
|
|| |||||| |||| || |||||| ||||||||||||||| |||||| ||||||||||||||| || ||||| ||| |||| || | || |
|
|
| T |
2874136 |
ctcgagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttctttt---------ttgaagcttttgaatccaacatgtg |
2874226 |
T |
|
| Q |
208 |
ttaatggtgcgcttcattggatcagatttgaggatg---aagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcc |
304 |
Q |
| |
|
| ||||| || ||||||||||| | |||||| | | || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
2874227 |
tgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcc |
2874326 |
T |
|
| Q |
305 |
tcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattct |
401 |
Q |
| |
|
|||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || ||| |
|
|
| T |
2874327 |
tccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaattgaagggatttctttacatttgtcatagatcgtct |
2874426 |
T |
|
| Q |
402 |
tttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
480 |
Q |
| |
|
| || || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2874427 |
ct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2874505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 2844599 - 2845068
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatcatattgtc |
107 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| ||||||| || | | ||| ||||||||||||| ||| | | ||||||||| | | | || |
|
|
| T |
2844599 |
tggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtgtagtg |
2844698 |
T |
|
| Q |
108 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
207 |
Q |
| |
|
|| |||||| |||| ||||||||| ||||||||||||| | |||||| ||||||||||||||| || ||||| ||| |||| || | || |
|
|
| T |
2844699 |
ctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttctttt---------ttgaagcttttgaatccaacatgtg |
2844789 |
T |
|
| Q |
208 |
ttaatggtgcgcttcattggatcagatttga---ggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcc |
304 |
Q |
| |
|
| ||||| || ||||||||||| | |||||| || || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
2844790 |
tgaatggcgcacttcattggattatatttgaaacggggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcc |
2844889 |
T |
|
| Q |
305 |
tcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattct |
401 |
Q |
| |
|
|||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || ||| |
|
|
| T |
2844890 |
tccacatgtgtttggaaatcatgataatggatttccccttagcatgcctattagattgggagaattgaagggatttctttacatttgtcatatatcgtct |
2844989 |
T |
|
| Q |
402 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
480 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2844990 |
cttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatactt |
2845068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
| Q |
415 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt |
2905003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 8547823 - 8547933
Alignment:
| Q |
195 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
294 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
8547823 |
tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat |
8547922 |
T |
|
| Q |
295 |
ttccttctcct |
305 |
Q |
| |
|
||||||||||| |
|
|
| T |
8547923 |
ttccttctcct |
8547933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 2904775 - 2904836
Alignment:
| Q |
247 |
aaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca |
308 |
Q |
| |
|
||| ||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2904775 |
aaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctcca |
2904836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 308
Target Start/End: Complemental strand, 9003930 - 9003739
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||| |||||| ||||||||| | ||||| || || |||| ||||||| |||| |
|
|
| T |
9003930 |
tccttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctat---------ttggagtcttaattatccgacttg |
9003842 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| ||||| || |||||||||||||||||||| | ||| ||| |||||||||||| ||| |||| ||||||||| ||||| |||||||| ||| |
|
|
| T |
9003841 |
tgtgaatggcgcacttcattggatcagatttgattttctgcaaatgtcaatattgtgtttcaatttggaaaatgagaggttccaatcttttccttcccct |
9003742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 577
Target Start/End: Original strand, 8548128 - 8548193
Alignment:
| Q |
512 |
gcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattc |
577 |
Q |
| |
|
|||| ||| ||| |||| |||||||||||||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
8548128 |
gcgtcatgctttgtgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattc |
8548193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 8536068 - 8536027
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgat |
49 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
8536068 |
tggttttggtttccaacctaaaactaatgaatataaggtgat |
8536027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 9003685 - 9003653
Alignment:
| Q |
356 |
catgggagaattaaggggattactttacatttg |
388 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
9003685 |
catgggagaattaaggggatttctttacatttg |
9003653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 11354043 - 11354079
Alignment:
| Q |
13 |
ttggcttccaacctaaaactaatggatatgaggtgat |
49 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11354043 |
ttggcttccaacctaaaactaatgaatataaggtgat |
11354079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 11373350 - 11373314
Alignment:
| Q |
13 |
ttggcttccaacctaaaactaatggatatgaggtgat |
49 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11373350 |
ttggcttccaacctaaaactaatgaatataaggtgat |
11373314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 106 - 639
Target Start/End: Complemental strand, 9443567 - 9443050
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| |
|
|
| T |
9443567 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
9443477 |
T |
|
| Q |
206 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
305 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9443476 |
tgtgaatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcct |
9443377 |
T |
|
| Q |
306 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
401 |
Q |
| |
|
||| |||||| ||||| |||||| | | || ||| || |||| ||||||||||||||| |||||| || |||||||| ||| | | || |
|
|
| T |
9443376 |
ccacatgtgtttggaaatc---ataatgtttattgtagta---ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgaccttta |
9443283 |
T |
|
| Q |
402 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
501 |
Q |
| |
|
| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | |
|
|
| T |
9443282 |
tatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg---atc |
9443187 |
T |
|
| Q |
502 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatg |
601 |
Q |
| |
|
|| | | | | ||||||||||| | |||||| |||||||||||||||| || |||||||||||| ||||||||||| ||| |||||| | ||| | | |
|
|
| T |
9443186 |
gtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgtttt-acctactacg |
9443088 |
T |
|
| Q |
602 |
aaccggagaaatatagatgcaaagtttttcgaattcat |
639 |
Q |
| |
|
|||| || |||||| | | ||||||||||||||||||| |
|
|
| T |
9443087 |
aacctgaaaaatatgggttcaaagtttttcgaattcat |
9443050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 48361391 - 48362004
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgatgtatatttaggacagatatgttagacgaggcaacagctgggtgtttgatcatattgtc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||| | || | || ||| |||||| ||| | ||| |||| |||||| | | | || |
|
|
| T |
48361391 |
tggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgatc |
48361490 |
T |
|
| Q |
108 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
207 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||| |||||| |||||||| |||||| || | || ||| | |||||||||| || |
|
|
| T |
48361491 |
cttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttt---------tcgagtctcgagtatcccacttgtg |
48361581 |
T |
|
| Q |
208 |
ttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcc |
307 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||| | | ||||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
48361582 |
tgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctcc |
48361681 |
T |
|
| Q |
308 |
a---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattcttt |
403 |
Q |
| |
|
| |||||| |||||| ||||||||| ||| | ||||| || |||| ||||||||||||||| |||||| ||||||||||| || | | || |
|
|
| T |
48361682 |
acatgtgtttggaaatcataataatggaattcttggtaacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgca |
48361781 |
T |
|
| Q |
404 |
tcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacct |
503 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || ||||| | ||| ||||| | |||| | |
|
|
| T |
48361782 |
tc-tgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatccttcgagcagtttt |
48361880 |
T |
|
| Q |
504 |
gattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatgaa |
603 |
Q |
| |
|
| ||| || || | |||| |||||| |||||||||||||||| || |||||||||||| |||||||||||| | || |||| || || ||||| |
|
|
| T |
48361881 |
gcttcttggcattcagcttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattcctacgaccgtttaatc-tattatgaa |
48361976 |
T |
|
| Q |
604 |
ccggagaaatatagatgcaaagtttttc |
631 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |
|
|
| T |
48361977 |
cctgagaaatatagatgcaaagcttttc |
48362004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 87 - 637
Target Start/End: Complemental strand, 35780301 - 35779782
Alignment:
| Q |
87 |
tgggtgtttgatcatattgtccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttga |
186 |
Q |
| |
|
||||||||||||| | || |||| || ||||||||||||||| || |||||||||||| || |||||| ||||||| ||||||||| ||| | |
|
|
| T |
35780301 |
tgggtgtttgatcgtgttatcctcgaaataaacacacttggagcaccatcatggagaactgttgaagtggatcctcgtatttctatt---tcaagc---- |
35780209 |
T |
|
| Q |
187 |
atcttcattatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggtt |
286 |
Q |
| |
|
||| | |||||||||| ||| ||||||| |||||| ||||||| |||||||| || ||| ||| ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
35780208 |
--cttaagtatcccacttgtgtgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggtt |
35780111 |
T |
|
| Q |
287 |
gcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttac |
383 |
Q |
| |
|
||| ||||||||||||||||| |||||| || ||| ||||| | ||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
35780110 |
gcagccatttccttctcctccacatgtgtttggaattcatgataatag---------------gcgtattagcatgggagaattaaagggatttctttac |
35780026 |
T |
|
| Q |
384 |
atttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttgg |
483 |
Q |
| |
|
||||| || ||| |||| ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |||| || |
|
|
| T |
35780025 |
atttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttacaacattgagacttcgg |
35779926 |
T |
|
| Q |
484 |
tcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaa |
583 |
Q |
| |
|
||| | || | ||| ||| ||| | ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||| |
|
|
| T |
35779925 |
tcaattctctaggctatcctatttcaccgcgttatggtttatgttggccggtaaaaccctttga---------tgccatattgttatatcattcatgcaa |
35779835 |
T |
|
| Q |
584 |
ctgttttgtcttaccatgaaccggagaaatatagatgcaaagtttttcgaattc |
637 |
Q |
| |
|
|||||| || ||| |||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
35779834 |
ttgttttatc-tactttgaacctgagaaatatggatacaaagtttttcgaattc |
35779782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 35780380 - 35780339
Alignment:
| Q |
8 |
tggttttggcttccaacctaaaactaatggatatgaggtgat |
49 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
35780380 |
tggttttggtttccaacctaaaactaatgaatataaggtgat |
35780339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 515 - 639
Target Start/End: Complemental strand, 5130876 - 5130749
Alignment:
| Q |
515 |
ttatggtttatgtt---ggccggtaaaacactttgaagagggggctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaa |
611 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5130876 |
ttatggtttatgtttttggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaa |
5130777 |
T |
|
| Q |
612 |
atatagatgcaaagtttttcgaattcat |
639 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
5130776 |
atatagatacaaagtttttcgaattcat |
5130749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 26324202 - 26324264
Alignment:
| Q |
407 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa |
469 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
26324202 |
tgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaa |
26324264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 387
Target Start/End: Complemental strand, 5131093 - 5130964
Alignment:
| Q |
258 |
ttgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattc |
354 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||||| ||| | | | ||||| ||| |
|
|
| T |
5131093 |
ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatc---ataatgatttttatggcaccgagcatatcg |
5130997 |
T |
|
| Q |
355 |
gcatgggagaattaaggggattactttacattt |
387 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |
|
|
| T |
5130996 |
gcatgggagaattaaagggatttctttacattt |
5130964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 5131236 - 5131169
Alignment:
| Q |
106 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctatt |
173 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||||||||||| |||||| |||| ||| ||||||||| |
|
|
| T |
5131236 |
tccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatt |
5131169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 409 - 480
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
| Q |
409 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
480 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
16716518 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt |
16716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 16716755 - 16716641
Alignment:
| Q |
196 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
295 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||| ||| |||||||| |||| ||||||||||||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
16716755 |
atcccacttgtgtgaatggtgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatt |
16716656 |
T |
|
| Q |
296 |
tccttctcctccagt |
310 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
16716655 |
tccttctcccccagt |
16716641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 577
Target Start/End: Complemental strand, 16716409 - 16716363
Alignment:
| Q |
531 |
ccggtaaaacactttgaagagggggctgccatattgctatatcattc |
577 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||| |||||||||| |
|
|
| T |
16716409 |
ccggtaaaacactttgaagagggtgctggcgtattgttatatcattc |
16716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 350 - 482
Target Start/End: Complemental strand, 4878 - 4746
Alignment:
| Q |
350 |
tattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaa |
449 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||| || || | || || ||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4878 |
tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa |
4779 |
T |
|
| Q |
450 |
tcatggactaaggtttacaagattgatactttg |
482 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| |
|
|
| T |
4778 |
tcatggactaaggtttaccacattaatactttg |
4746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 5054 - 4942
Alignment:
| Q |
196 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
295 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||| | |||| ||| |||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
5054 |
atcccacttgtgtgaatggtgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatt |
4957 |
T |
|
| Q |
296 |
tccttctcctccagt |
310 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
4956 |
tccctctcccccagt |
4942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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