View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_52 (Length: 401)
Name: NF0740_low_52
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 35983522 - 35983880
Alignment:
| Q |
15 |
gagatgtgactacaacatatagataaatcactcttgtattgctattccattatatctatatatttttgaataaaaaactacaactagtcctataaatata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35983522 |
gagatgtgactacaacatatagataaatcactcttgtattgctattccattatatctatatatttttgaataaaaaactacaactagtcctataaatata |
35983621 |
T |
|
| Q |
115 |
aattatttaagggatatagacgcagtagatgatccaaatccacatgaatttagacatggttggttgacnnnnnnnatccttaaaaattgattggataact |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35983622 |
aattatttaagggatacagacgcagtagatgatccaaatccacatgaatttagacatggttggttgactttttttatccttaaaaattgattggataact |
35983721 |
T |
|
| Q |
215 |
tcagacaataccacttgaaaat-nnnnnnntatattttcctttttaatttcaatattgcacttactctttctcactcaccatatttcaactatttctatt |
313 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35983722 |
tcagacaacaccacttgaaaataaaaaaaaaatattttcctttttaatttcaataatgcacttactctttctcactcaccatatttcaactatttctatt |
35983821 |
T |
|
| Q |
314 |
ctttgactttggaattggaaaccaaaaactccatttccactttgttctgaccttaatct |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35983822 |
ctttgactttggaattggaaaccaaaaactccatttccactttgttctgaccttaatct |
35983880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4229 times since January 2019
Visitors: 4829