View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_57 (Length: 390)
Name: NF0740_low_57
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 381
Target Start/End: Original strand, 45122304 - 45122654
Alignment:
| Q |
30 |
gatccgccactgggctaaacatcatcccctcacaccttatatttttcttattaaataaaatagaaaaataattgtttgatacttttaataagctaatcaa |
129 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45122304 |
gatccgccactggactaaacatcatcccctcacaccttatatttttcttattaaataaaatagaaaaataattgtttgatacttttaataagctaatcaa |
45122403 |
T |
|
| Q |
130 |
caaaataaaagtttgatacttcagttttggacaaacttgtgtgaagtcaatattaacatttattgcattttctagtttattttgagtaaaatgttatcct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
45122404 |
caaaataaaagtttgatacttcagttttggacaaacttgtgtgaagtcaatattaacatttattgcattttcaagtttattttgagtaaaaagttatcct |
45122503 |
T |
|
| Q |
230 |
catcgtggaaacaatatccgagagtcaccaatatctggcactctctaatggagcagtcatgggaaaatgtttggccttttcaaacggtaatgagttccag |
329 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45122504 |
catcgtggaaacaatatacgagagtcaccaatatctggcactctcttatggagcagtcatgggaaaatgtttggccttttcaaacggtaatgagttccag |
45122603 |
T |
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| Q |
330 |
cataaattgatacaaatatattaattgtgtttttcattacgtatagtataat |
381 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
45122604 |
cataaattgatacaaatatattaattgcgtttttca-tacgtatagtataat |
45122654 |
T |
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